PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000306154
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 454aa    MW: 50934.9 Da    PI: 6.5847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000306154genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4141.4e-126464511374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++v++g+le+a+ +L+++s+la+ dgd+mqR+aayfteA a+r+++ +++l +al++++ s   +s+e+ ++k+f+++ P+lk++++
  MDP0000306154  46 LIHLLLTCANHVATGSLENANVALEQISQLAAADGDTMQRIAAYFTEAFANRILKAWPGLHRALNSTKIS--LVSDEILVRKVFFKMLPFLKVAFV 139
                    689*************************************************************999998..7*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI+ea+e e++vHiiD+++ + +QW++Llq L++Rpegpp+lRiTgv++    +k+ l ++++rL++ A++l++p++f + + ++le+l+++
  MDP0000306154 140 LTNQAIMEAMEXEKMVHIIDLNAAELVQWITLLQVLSARPEGPPHLRITGVHQ----QKDVLDQMAHRLTEEAKKLDIPIQFCP-IISKLENLDMD 230
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll.....................................desvsles..erdevLklvkslsPkvvvvveqeadhn 249
                    +Lrvk+gEala+++   l +                                       ++++sl+   + d++L+++++l Pkv+v++eq+++hn
  MDP0000306154 231 KLRVKTGEALAISSKSXLASKGsngnhlpralqmxqgtlgellekxmgngyspspdstsSSPLSLTPsaKLDSFLNAFWGLTPKVMVITEQDSNHN 326
                    ****************99998899*******************************999855555544457899*********************** PP

           GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                    +++++er+le+l+ y+alfd+le+++ r+s er kvE++l+g+ei+n++aceg+er+e he+l kW +rl+ a F++vpls++++ qak++l+ ++
  MDP0000306154 327 GSTLMERLLESLYLYAALFDCLESTMLRTSLERLKVEKMLFGEEIKNIIACEGSERTEXHEKLXKWIQRLDLAVFGNVPLSYYEMLQAKRMLQSYG 422
                    ************************************************************************************************ PP

           GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     dgyr+ ee+g++++  +drp +s+SaWr
  MDP0000306154 423 CDGYRMREENGCVLISXQDRPXFSMSAWR 451
                    ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.49920431IPR005202Transcription factor GRAS
PfamPF035144.7E-12446451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MFQDEGSSSA TSSPLQCFSM ISFSPSLSSP YPWLKELKSE DHGLYLIHLL LTCANHVATG  60
SLENANVALE QISQLAAADG DTMQRIAAYF TEAFANRILK AWPGLHRALN STKISLVSDE  120
ILVRKVFFKM LPFLKVAFVL TNQAIMEAME XEKMVHIIDL NAAELVQWIT LLQVLSARPE  180
GPPHLRITGV HQQKDVLDQM AHRLTEEAKK LDIPIQFCPI ISKLENLDMD KLRVKTGEAL  240
AISSKSXLAS KGSNGNHLPR ALQMXQGTLG ELLEKXMGNG YSPSPDSTSS SPLSLTPSAK  300
LDSFLNAFWG LTPKVMVITE QDSNHNGSTL MERLLESLYL YAALFDCLES TMLRTSLERL  360
KVEKMLFGEE IKNIIACEGS ERTEXHEKLX KWIQRLDLAV FGNVPLSYYE MLQAKRMLQS  420
YGCDGYRMRE ENGCVLISXQ DRPXFSMSAW RCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-63294531380Protein SCARECROW
5b3h_D6e-63294531380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337039.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A314XF110.0A0A314XF11_PRUYE; Scarecrow-like protein 3
STRINGXP_008355293.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]