PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000305994
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family S1Fa-like
Protein Properties Length: 715aa    MW: 77184.5 Da    PI: 6.3039
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000305994genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA22.22.9e-07310344741
           S1FA   7 eakGlnPGlivllvvgglllvflvgnyilyvyaqk 41 
                     +kGl PGli+l+ v+   +v ++g  ++y+y +k
  MDP0000305994 310 PVKGLSPGLIILISVADAAVVAFIGLVVVYIYWKK 344
                    57******************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082631.8E-92363IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520581.26E-4624286IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.2E-5425268IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR000191.6E-5147160No hitNo description
PfamPF138551.0E-6171221IPR001611Leucine-rich repeat
PRINTSPR000191.6E-5194207No hitNo description
PfamPF046893.2E-4311344IPR006779DNA binding protein S1FA
PROSITE profilePS5001132.146418713IPR000719Protein kinase domain
SMARTSM002209.3E-13422713IPR000719Protein kinase domain
PfamPF000691.0E-33423702IPR000719Protein kinase domain
SuperFamilySSF561123.1E-57423710IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.204.3E-14424480No hitNo description
CDDcd140662.47E-89424712No hitNo description
Gene3DG3DSA:1.10.510.102.6E-33481706No hitNo description
PROSITE patternPS001080541553IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MEPSSFYALL VLLLLVDTTL SLNSDGLSLL SLKSAVDQPA DGSAFSDWLD TDPTPCRWTG  60
ISCMNISGFP DPRVVGIALS GKNLRGYIPS ELSNLVNLRR LNLHDNNFHG SIPSQLFNAT  120
SLLHSIFLYG NNLSGPLPPS ICNPPRLQNL DLSNNSLSGP LQKDYLENCK QLQRLILARN  180
RFDGEIPAGI WSGMDNLNQL DLSSNELTGS VPDDFLELKS LSGALNLSYN HLSGKIPKSL  240
GDLPVTVSLD LRNNNFSGEI PQTGSFSNQG PTAFLDNPLL CGFPLQKTCK TPEQSSADSP  300
NSGSGSENSP VKGLSPGLII LISVADAAVV AFIGLVVVYI YWKKKGDENG CSCTGKSKFG  360
GNEKRHLCNL CSCACINGGF GNQDSDSGDP EKAERGKGEG DLVAIDKGFT FELDELLRAS  420
AYVLGKSGLG IVYKVVLGNG IPVAVRRLGE GGDQRYKEFA AEIQAIGRVK HPNVVKLRAY  480
YWAPDEKLLI SDFISNGNLA TALRGRIGQS SSSPSWTTRL KIAKGTARGL AYLHECSPRK  540
FVHGDIKPSN ILLDNEYQAY ISDFGLNRLI TITGNNPSSG GLMGGALPYM KPVQTERSNS  600
YRAPEARVTG SKPTQKWDVY SFGVVLLELL TGKSPELSPT TSTSAEVSDL VSSVRKGFED  660
ENPLSDMVDH VLMQEVHAKK EVLAAFHVAL ACTELDPEVR PRMKTVSENL ERVGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4q5j_A1e-4242371349319Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B1e-4242371349319Protein BRASSINOSTEROID INSENSITIVE 1
5lpb_A5e-4342371324294Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A5e-4342371324294Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A5e-4342371324294Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A5e-4342371324294Protein BRASSINOSTEROID INSENSITIVE 1
5lpz_A1e-4242371324294Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.58000.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350956.10.0receptor protein kinase-like protein ZAR1
TrEMBLA0A498HQR20.0A0A498HQR2_MALDO; Uncharacterized protein
STRINGXP_008350956.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF540055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.23e-09WRKY family protein