PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000305695

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 245aa MW: 27035.4 Da PI: 9.8027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000305695	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.5	5.4e-25	2	133	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.............................edamsslv 62 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r + +++sl+ MDP0000305695 2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRpgslffrlypsfsxlrfpmfsflifvrlfSVLFQSLL 97 6********************************************************************************************* PP DUF260 63 yeAearardPvyGavgvilklqqqleqlkaelallk 98 +eA+ r+ +Pv+Gavg++++++++++q+++e++ll+ MDP0000305695 98 FEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLLG 133 ****************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.631	1	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-12	2	61	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-6	92	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PGSLFFRLYP SFSXLRFPMF SFLIFVRLFS VLFQSLLFEA CGRTVNPVNG AVGLLWTGNW 120 HVCQAAVETV LLGGTLRPIP ELLGGALRDP SHNSGSSSRF PSSRSARASS PKRKRSTADD 180 ESSTKLLQLQ HHADLDLRLT XTMSFKPKPK PETRRPGTPS MNSEESGVTT CFESGFADHH 240 RSSYS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5453	4e-91	bud\| flower\| fruit\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008340959.2	1e-131	LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-71	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A314XUB9	1e-119	A0A314XUB9_PRUYE; LOB domain-containing protein 38
STRING	XP_008344349.1	1e-131	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	7e-69	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	MDP0000305695

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]