PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000304904

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 1025aa MW: 118611 Da PI: 6.8789

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000304904	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	73.3	7.3e-23	127	185	2	60
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaik 60 g+kdrhsk++T +g+RdRRvRl +++a++++dLq++LG+ ++sk ++WLl + ++ MDP0000304904 127 FGGKDRHSKVCTIRGLRDRRVRLXVPTAIQLYDLQERLGLNQPSKVVDWLLDDDHNQVR 185 689************************************************98776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-21	129	189	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.602	129	187	IPR017887	Transcription factor TCP subgroup
SuperFamily	SSF74788	5.23E-110	212	585	IPR016159	Cullin repeat-like-containing domain
Gene3D	G3DSA:1.20.1310.10	5.6E-36	212	347	No hit	No description
Pfam	PF00888	6.3E-179	225	848	IPR001373	Cullin, N-terminal
Gene3D	G3DSA:1.20.1310.10	2.7E-39	348	464	No hit	No description
Gene3D	G3DSA:1.20.1310.10	2.6E-33	469	593	No hit	No description
SuperFamily	SSF75632	1.44E-91	589	858	IPR016158	Cullin homology
PROSITE profile	PS50069	50.306	590	820	IPR016158	Cullin homology
Gene3D	G3DSA:1.20.1310.10	8.6E-38	594	702	No hit	No description
SMART	SM00182	1.7E-74	621	770	IPR016158	Cullin homology
Gene3D	G3DSA:4.10.1030.10	2.8E-27	707	779	No hit	No description
Gene3D	G3DSA:1.10.10.10	1.3E-14	780	847	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.7E-16	848	912	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.62E-12	860	912	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00884	9.1E-7	872	946	IPR019559	Cullin protein, neddylation domain
Pfam	PF10557	2.0E-12	875	912	IPR019559	Cullin protein, neddylation domain
Gene3D	G3DSA:3.30.420.10	2.8E-6	955	1017	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0031625	Molecular Function	ubiquitin protein ligase binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MGGRDKERER VFXRVREIGG EKRTPQKWGS HPNGNFSAXR EAEFPVEVAN IIEAEDVVGL 60 LGEEYFGFEG GEEHQKHSGG RLWSSXTSRE CVAREANKIS SNPNLSRSST LWPRLKDPRI 120 VRASXAFGGK DRHSKVCTIR GLRDRRVRLX VPTAIQLYDL QERLGLNQPS KVVDWLLDDD 180 HNQVRLLPGF WLHGCELESG RMAMNERKTI DLEQGWEFMQ KGITKLKNIL EGLPEPQFSS 240 EDYMMLYTTI YNMCTQKPPH DYSQQLYDKY RESFEEYITS TVLPSLREKH DEFMLRELVK 300 RWTNHKIMVR WLSRFFHYLD RYFIARRSLP PLNEVGLACF RDLVYQELKP KVRSAVISLI 360 DQEREGEQID RALLKNVLDI FVEIGMGQMD HYENDFEADM LKDTAAYYSR KASNWILEDS 420 CPDYMLKAEE CLKREKDRVS NYLHSSSEPK LLEKVQHELL SVYATQLLEK EHSGCHALLR 480 DDKVDDLSRM FRLFSKIPRG LDPVSQIFKQ HVTAEGTALV KQAEDAASNK KAEKKDVVGL 540 QEQVFVRKVI ELHDKYIAYV NECFQNHTLF HKALKEAFEI FCNKGVAGSS SAELLATFCD 600 NILKKGGSEK LSDEAIEETL EKVVKLLAYI SDKDLFAEFY RKKLARRLLF DKSANDDHER 660 CILTKLKQQC GGQFTSKMDG MVTDLTLAKD NQVGFEEYLR NNPQANPGID LTVTVLTTGF 720 WPSYKTFDLN LPPEMVKCVE LFREFYQTKT KHRKLTWMYS LGTCNIIGKF XPKTIELIVT 780 TYQASALLLF NTSDRLSYSE IMTQLNLTDD DVVRLLHSLS CAKYKILNKE PNTKTISPTD 840 YFEFNDKFTD KMRRIKIPLP PVDEKKKVIE DVDKDRRYAI DASIVRIMKS RKVLGHQQLV 900 MECVEQLGRM FKEAYFRSQC VHLKLHVDDR ISNLSGXVMR DRLRPHFNPR FHRDITLFDE 960 SGDVGGTWEF DFQGFDEEAN PHVAESIALL KANGXDLDKL WKFGIDSEIF VEGFVGSSSS 1020 TEFAN

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MGGRDKERER VFXRVREIGG EKRTPQKWGS HPNGNFSAXR EAEFPVEVAN IIEAEDVVGL  60
LGEEYFGFEG GEEHQKHSGG RLWSSXTSRE CVAREANKIS SNPNLSRSST LWPRLKDPRI  120
VRASXAFGGK DRHSKVCTIR GLRDRRVRLX VPTAIQLYDL QERLGLNQPS KVVDWLLDDD  180
HNQVRLLPGF WLHGCELESG RMAMNERKTI DLEQGWEFMQ KGITKLKNIL EGLPEPQFSS  240
EDYMMLYTTI YNMCTQKPPH DYSQQLYDKY RESFEEYITS TVLPSLREKH DEFMLRELVK  300
RWTNHKIMVR WLSRFFHYLD RYFIARRSLP PLNEVGLACF RDLVYQELKP KVRSAVISLI  360
DQEREGEQID RALLKNVLDI FVEIGMGQMD HYENDFEADM LKDTAAYYSR KASNWILEDS  420
CPDYMLKAEE CLKREKDRVS NYLHSSSEPK LLEKVQHELL SVYATQLLEK EHSGCHALLR  480
DDKVDDLSRM FRLFSKIPRG LDPVSQIFKQ HVTAEGTALV KQAEDAASNK KAEKKDVVGL  540
QEQVFVRKVI ELHDKYIAYV NECFQNHTLF HKALKEAFEI FCNKGVAGSS SAELLATFCD  600
NILKKGGSEK LSDEAIEETL EKVVKLLAYI SDKDLFAEFY RKKLARRLLF DKSANDDHER  660
CILTKLKQQC GGQFTSKMDG MVTDLTLAKD NQVGFEEYLR NNPQANPGID LTVTVLTTGF  720
WPSYKTFDLN LPPEMVKCVE LFREFYQTKT KHRKLTWMYS LGTCNIIGKF XPKTIELIVT  780
TYQASALLLF NTSDRLSYSE IMTQLNLTDD DVVRLLHSLS CAKYKILNKE PNTKTISPTD  840
YFEFNDKFTD KMRRIKIPLP PVDEKKKVIE DVDKDRRYAI DASIVRIMKS RKVLGHQQLV  900
MECVEQLGRM FKEAYFRSQC VHLKLHVDDR ISNLSGXVMR DRLRPHFNPR FHRDITLFDE  960
SGDVGGTWEF DFQGFDEEAN PHVAESIALL KANGXDLDKL WKFGIDSEIF VEGFVGSSSS  1020
TEFAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a0k_A	1e-121	246	907	69	706	CULLIN-4A
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7706	0.0	fruit\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in dry seeds and coleoptiles. {ECO:0000269\|PubMed:29892794}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250\|UniProtKB:Q94AH6}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid, heat shock, salt stress and drought stress. {ECO:0000269\|PubMed:29892794}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE802075	0.0	HE802075.1 Pyrus x bretschneideri mRNA for CUL1 protein, cultivar YaLi, haplotype S21S34.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008390685.2	0.0	cullin-1-like
Refseq	XP_028947872.1	0.0	cullin-1-like
Swissprot	Q5ZC88	0.0	CUL1_ORYSJ; Cullin-1
TrEMBL	M1WL48	0.0	M1WL48_9ROSA; CUL1 protein
STRING	XP_008390685.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	9e-25	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	MDP0000304904

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhao J, et al. DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching. Plant Cell Physiol., 2014. 55(6): p. 1096-109 [PMID:24616269] Tan S, et al. CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa. Sci Rep, 2016. 6: p. 25485 [PMID:27137867] Tao T, et al. Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway. PLoS ONE, 2017. 12(5): p. e0177518 [PMID:28494021] Kim SH,Woo OG,Jang H,Lee JH Characterization and comparative expression analysis of CUL1 genes in rice. Genes Genomics, 2018. 40(3): p. 233-241 [PMID:29892794]