PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000304650

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 393aa MW: 45078.9 Da PI: 6.575

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000304650	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.3e-21	83	143	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ MDP0000304650 83 RQRWTPTALQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 143 89***************99************************************97 PP
2	Wus_type_Homeobox	99.1	3.3e-32	82	145	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq MDP0000304650 82 ARQRWTPTALQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 145 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-17	78	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.354	79	144	IPR001356	Homeobox domain
SMART	SM00389	5.5E-14	81	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.18E-18	82	147	IPR009057	Homeodomain-like
Pfam	PF00046	4.3E-19	83	143	IPR001356	Homeobox domain
CDD	cd00086	2.89E-13	83	145	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MMEWEKQQEM EGNGSGGVMY VKVMTDEQLE TLRKQIAVYA TICEQLVEMH KNLTAQQDLA 60 GVRMGNLYCD QLMTSTGHKI TARQRWTPTA LQLQILERLF EQGNGTPSKQ KIKEITSELS 120 QHGQISETNV YNWFQNRRAR SKRKQQNAAC NHAESEVETE VDSPKDKKTR PEETFQSQQN 180 SAQRTEDLCF QSQEISSDLH FLDPHTTKAD KMFPSHSGLR SSRHLSEMAF YDDVLSRHDL 240 MTGKMEAGNY NLFQEAEDYG MTVVVVFHDF TIRACRKGRE EQDLRGFRAW APIAIEVERG 300 LRLEYTYLHD CKRPCEAVDV HHIIVRKSGA KGLFVYLFAV VILATAFYVF FVKEKSXIIV 360 LWSLLLDAFL VKLLQKSVEK GEDPSDGAFG PLN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MMEWEKQQEM EGNGSGGVMY VKVMTDEQLE TLRKQIAVYA TICEQLVEMH KNLTAQQDLA  60
GVRMGNLYCD QLMTSTGHKI TARQRWTPTA LQLQILERLF EQGNGTPSKQ KIKEITSELS  120
QHGQISETNV YNWFQNRRAR SKRKQQNAAC NHAESEVETE VDSPKDKKTR PEETFQSQQN  180
SAQRTEDLCF QSQEISSDLH FLDPHTTKAD KMFPSHSGLR SSRHLSEMAF YDDVLSRHDL  240
MTGKMEAGNY NLFQEAEDYG MTVVVVFHDF TIRACRKGRE EQDLRGFRAW APIAIEVERG  300
LRLEYTYLHD CKRPCEAVDV HHIIVRKSGA KGLFVYLFAV VILATAFYVF FVKEKSXIIV  360
LWSLLLDAFL VKLLQKSVEK GEDPSDGAFG PLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008392426.1	0.0	WUSCHEL-related homeobox 13-like
Swissprot	O81788	5e-86	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A498KKP1	0.0	A0A498KKP1_MALDO; Uncharacterized protein
STRING	XP_008392426.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-88	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	MDP0000304650

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]