PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000304584
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 901aa    MW: 99908.9 Da    PI: 7.655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000304584genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.3e-11532558127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ ++C +++rtG+C yG+rC+++H++
  MDP0000304584 532 PGVPNCVYYMRTGFCGYGGRCRYNHPR 558
                    5789*********************96 PP
2zf-CCCH28.52.7e-09585609327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    + +C+++++t +Ck+G +CkF+H++
  MDP0000304584 585 ENECSYYLKTEQCKFGITCKFHHPQ 609
                    678********************97 PP
3zf-CCCH33.66.5e-11729752427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C ++++tG CkyG++C+++H++
  MDP0000304584 729 LECEYYLKTGDCKYGPSCRYHHPR 752
                    58********************96 PP
4zf-CCCH35.22e-11773797226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +  +C f++++G+Ck+G++CkF H+
  MDP0000304584 773 GVQPCTFYLQNGQCKFGSTCKFDHP 797
                    6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.107.4E-30131370IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509982.35E-28139370IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM003209.6E-8251290IPR001680WD40 repeat
PfamPF004001.2E-4252290IPR001680WD40 repeat
PROSITE profilePS5029414.977258342IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.249258299IPR001680WD40 repeat
SMARTSM0032024294333IPR001680WD40 repeat
SMARTSM003565.7E-6531558IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535531559IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8533558IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6535560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4537558IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.798583610IPR000571Zinc finger, CCCH-type
SMARTSM003560.26584609IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6585609IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5725752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314725753IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8729752IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5729754IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5731753IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6771798IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76771799IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9773797IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6773801IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5775798IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MFYVCRAAAV KREKMFVSNE VHCDEGSNVD SEVDERGTKS LLEQQDQTVV SHSSQEKQVN  60
LTEPQEFDHT PLKFRSVKDL RNLVWATSKH DVYLMSHFSV IHWSSLSCTK SEVLNVSGHV  120
APSEKHXGSL LEGFTRTQVS TLAVKDKLLV AGGFQGELIC KHLDRPGVSF CSRTTNAITN  180
XVEIYDSXSG AVHFTASNND CGVRDFDXEK XQLTKHFRYP WPVNHTSLSP DGKLLVIVGD  240
XPEGMLVNSQ TGKTVMSLSG HLDFXFASAW HPDGMTFATG NQDKTCRIWD VRNLSKSVAV  300
LKGNLGAIRS IRYTSDGQYM MMAEPADFVH XYDVKSGYEK EQEIDFFGEI SGISFSPDTE  360
SLFIGVWDRT YGSLLEYGRS RNYSYPGVKN LYAYKCDFCI VPNTKCYTIH DIEFPCMMNH  420
RIQKVLVRPY RYGIRTGFHR IWQPYEEKYD ASVQQQSWKS ESECNCATVY ILPAKWSVQV  480
WIYMQMRYNL SASSLVDMHV VQYPVGSVLA TLAPSSSSSD LRPRSESYPE RPGVPNCVYY  540
MRTGFCGYGG RCRYNHPRDR AAVMATVRAT GDYPEIVGEP VCEGENECSY YLKTEQCKFG  600
ITCKFHHPQP AGTTIPASAP QSYLSVQSPV PLAEHLRVAR PPLLTGSYVQ GTYGPVLIPP  660
GVVPIQGWSP YSAPLSPVPS PGATSLYGVT QLSSPIHGLA SPYTSIPSSV GPSSSNRSEQ  720
VFPERPGELE CEYYLKTGDC KYGPSCRYHH PRDRTVPRIT CLLSPMDLPL RPGVQPCTFY  780
LQNGQCKFGS TCKFDHPVQS MRCNLSASSL VDMPPVQYPV GSLLATLAPS SSSSDLRPEL  840
LSASKKDRVP SSGNTSSSSG GLIFSKSGSV SLSDVQLSSQ ISSPLSNSRS TRPGGEFRRS  900
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzv_A4e-1219437076251Probable serine/threonine-protein kinase PkwA
5yzv_B4e-1219437076251Probable serine/threonine-protein kinase PkwA
5yzv_C4e-1219437076251Probable serine/threonine-protein kinase PkwA
5yzv_D4e-1219437076251Probable serine/threonine-protein kinase PkwA
5yzv_E4e-1219437076251Probable serine/threonine-protein kinase PkwA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122110.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-117C3H family protein