PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000304106
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 439aa    MW: 48504.5 Da    PI: 6.3772
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000304106genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-093623991954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  MDP0000304106 362 FEHflHPYPNDNEKLLLASQTGLSKNQVSNWFINARVR 399
                    665559******************************88 PP
2BELL98.55.3e-32225295272
           BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    ++e+q++ a L++lle+V++r ++y++q+++v+ssFe+v+g g+ak+Yt+lAlka+SrhF +L+d i+++i
  MDP0000304106 225 KHEMQARLANLITLLEQVEDRCEKYYHQMEQVMSSFEMVVGEGAAKSYTALALKAMSRHFCSLRDGIVSHI 295
                    79******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-33154293IPR006563POX domain
PfamPF075261.7E-39159291IPR006563POX domain
PROSITE profilePS5007111.872340403IPR001356Homeobox domain
SMARTSM003892.9E-8343407IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-26348409IPR009057Homeodomain-like
SuperFamilySSF466891.97E-17349411IPR009057Homeodomain-like
CDDcd000865.56E-12349404No hitNo description
PfamPF059201.4E-16360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVSQDSPPNP SSSIFHQFII SDSISAHNHH LESQHLDAYP PSFQTSTTFP QALGVLPSIH  60
SLGERMSQSV GLVQAPTGAA MENQAQRLSL SLGSHMLVPS GQYRHHNFDT GEESGEACNR  120
GVEHVGDEYC FMGGMLALHS SALNRSCSTS YGAESLAAVI ANSKYLKPAQ SLLEEIVNVG  180
GQLVDISNEK HVGKLYGEGR RGGMGLSSEL RAELSCNGGL MNADKHEMQA RLANLITLLE  240
QVEDRCEKYY HQMEQVMSSF EMVVGEGAAK SYTALALKAM SRHFCSLRDG IVSHIYAEKR  300
KLLQDVPKIS SGLSQLNLFD RECRHKRMSL QQLGIFQSQR QAFRPIRGLP ETSVAILRNW  360
LFEHFLHPYP NDNEKLLLAS QTGLSKNQVS NWFINARVRL WKPMIEEMYN EEFGESSEDS  420
NSLAGGSLTG EGNTDQTGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16349406158Homeobox protein Meis1
4xrs_B5e-16349406158Homeobox protein Meis1
5bng_A6e-16349407159Homeobox protein Meis2
5bng_B6e-16349407159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272530.0AB627253.1 Malus x domestica mRNA, microsatellite: MEST101, clone: LEF01_08_A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388023.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-101BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A498HWF90.0A0A498HWF9_MALDO; Uncharacterized protein
STRINGXP_008388023.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-104BEL1-like homeodomain 11