PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303483
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 291aa    MW: 32858.2 Da    PI: 6.7455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303483genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-06123142120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C+k+F+r  n++ H+
  MDP0000303483 123 FSCPVCSKTFNRYNNMQMHM 142
                    89*****************9 PP
2zf-C2H213.90.00016208230123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  + + ++H +++
  MDP0000303483 208 FGCRKCGKPFAVRGDWRTHEKNC 230
                    56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-5119145No hitNo description
PROSITE profilePS5015710.242123150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-6123142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SMARTSM00355220171203IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.02E-5191228No hitNo description
Gene3DG3DSA:3.30.160.608.8E-5194228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140208228IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQTPFTTTTI DEDFQDEDSI FLSLGPPGQD VPKQYHLIYH NQSSSXTQPD HHRTFYHDYS  60
NPNPDPEDGT ITVALNIEPP SGGGGRPSSS SISKPNHNHI GGPVEGQYWI PSPAQILVGP  120
TQFSCPVCSK TFNRYNNMQM HMWGHGSQYR KGPESLRGTK PASSVLRLPC YCCAEGCKNN  180
IEHPRSRPLK DFRTLQTHYK RKHGTKPFGC RKCGKPFAVR GDWRTHEKNC GKLWFCICGS  240
DFKHKRSLKD HVRAFGDGHA PYGVELCTEP EEEDHVDDEE DDNNDDDLVI N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339700.20.0zinc finger protein WIP6-like
SwissprotQ9FX681e-118ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A498HHB70.0A0A498HHB7_MALDO; Uncharacterized protein
STRINGXP_008339700.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-116C2H2-like zinc finger protein