PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303431
Common NameMYBR5
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 274aa    MW: 29920.7 Da    PI: 6.0832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-074074137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     r +W++ E++++++a +++  + Wk+I + +g  +t 
    MDP0000303431 40 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTV 74
                     789*****************77.*********.8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.79E-102682IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-83874IPR006447Myb domain, plants
PfamPF002491.9E-54074IPR001005SANT/Myb domain
CDDcd001672.26E-44276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPLPGLGPFA SATATTSTTS SSAEDLSKKI RKPYTITKSR ESWSEPEHDK FLEALQLFDR  60
DWKKIEAFIG SKTVIQSFNP YSHVLCFPAL ALPPVSWSCQ SSSALLESGF NQRPDSSSML  120
MSPIPGPVAP SWPNGSVQTA NPSHESKVVS GPTVLNNSCS TTESTPKAQP VGGTTDQVNH  180
SHALRVLPDF TQVYGFIGSV FDPNVTGHLQ NLKKMDPIDV ETVLLLMRNL SMNLTNPEFE  240
DHRQLLSSYK MDANTGNLSD ATKTLCDDQH EKVP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144280.0bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744760.0DQ074476.1 Malus x domestica MYBR5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280990.11e-178uncharacterized protein LOC103439808
SwissprotQ8H0W31e-77RVE6_ARATH; Protein REVEILLE 6
TrEMBLQ2LMD61e-176Q2LMD6_MALDO; MYBR5
STRINGXP_008376649.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.26e-77MYB_related family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants.
    Plant Methods, 2005. 1: p. 13
    [PMID:16359558]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]