PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000303211

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 284aa MW: 32254 Da PI: 9.7452

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000303211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	35.4	3.1e-11	207	254	82	128
NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +W +d++ +++ ++ ktLv+ykgrap+ge+tdWvmhey+l MDP0000303211 207 VWTRWPEDNHFYEAvITNFNRAEKTLVYYKGRAPSGERTDWVMHEYTL 254 566666666666643334467789**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF158639	7.85E-35	44	154	IPR005491	ENT domain
SMART	SM01191	2.0E-35	50	123	IPR005491	ENT domain
PROSITE profile	PS51138	22.392	50	137	IPR005491	ENT domain
Pfam	PF03735	1.9E-28	52	120	IPR005491	ENT domain
PROSITE profile	PS51005	9.82	137	277	IPR003441	NAC domain
Gene3D	G3DSA:2.30.30.140	1.9E-5	201	236	No hit	No description
SuperFamily	SSF63748	6.88E-7	201	236	No hit	No description
CDD	cd04508	0.00587	204	235	No hit	No description
SuperFamily	SSF101941	3.66E-13	229	277	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDYELSDSSG TDDDFXPSHQ NRFQRGGRTS GNGRSAAVSS APLPRMHGDM ETQIHRIEQE 60 AYCSLLRAFS AQSDAITWDK ETLMTNLRKE LRVSDEEHRE LLSRVXADDM IQRIRQWRKS 120 GLQPGTLNAA QPVHDPLPSP TVSASRKKQK TSQSLSLGAP TPXLPXSMQP SSSALRRGPP 180 PGPRNKKPKS SEPAGGETSD PLVGRKVWTR WPEDNHFYEA VITNFNRAEK TLVYYKGRAP 240 SGERTDWVMH EYTLDEEELK RCQNVQQYHA IYKVYKKQTR LSNK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8485	1e-119	bud\| fruit\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probably involved in the regulation of chromatin states (Probable). Contributes to basal immunity (PubMed:21830950). {ECO:0000269\|PubMed:21830950, ECO:0000305\|PubMed:21830950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349200.1	1e-155	PREDICTED: protein EMSY-LIKE 3-like
Refseq	XP_028943688.1	1e-156	protein EMSY-LIKE 3-like
Refseq	XP_028943689.1	1e-156	protein EMSY-LIKE 3-like
Swissprot	F4K2F0	4e-90	EML3_ARATH; Protein EMSY-LIKE 3
TrEMBL	A0A498IPY4	1e-139	A0A498IPY4_MALDO; Uncharacterized protein
TrEMBL	A0A498K8J0	1e-141	A0A498K8J0_MALDO; Uncharacterized protein
STRING	XP_009349200.1	1e-155	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34180.1	8e-22	NAC domain containing protein 16

Link Out ? help Back to Top
Phytozome	MDP0000303211

Publications ? help Back to Top
Coursey T,Milutinovic M,Regedanz E,Brkljacic J,Bisaro DM Arabidopsis Histone Reader EMSY-LIKE 1 Binds H3K36 and Suppresses Geminivirus Infection. J. Virol., 2018. [PMID:29875242]