PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303048
Common NameGATA6
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 306aa    MW: 33338.9 Da    PI: 5.6276
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303048genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16218253134
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C +Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g
  MDP0000303048 218 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 253
                    *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.5E-1284119IPR010399Tify domain
PROSITE profilePS5132014.56984119IPR010399Tify domain
PfamPF062001.0E-1287118IPR010399Tify domain
PfamPF062035.9E-15150192IPR010402CCT domain
PROSITE profilePS5101712.531150192IPR010402CCT domain
SuperFamilySSF577161.57E-11210268No hitNo description
SMARTSM004015.2E-16212265IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.027212268IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-15216259IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.18E-14217267No hitNo description
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
PfamPF003201.5E-13218253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTIDSIREPP PMSMYGHSQD MTMPNPIPAC DDDDAGAADS IDNAHIQYDS HTLEDGGIVV  60
VEDVSSDGVY VQGGSASSEL RGPPYDGSSQ LTLSFRGQVF VFDAVTPEKV QAVLLLLGGN  120
ELSPSAQGTE LASQNQRAME DYPRCSQPHR AASLIRFRQK RKERCFDKKV RYGVRQEVAL  180
RMQRNKGQFS SSKRSDGDSN WSAGQESGQE DCHAETSCKH CGISSKSTPM MRRGPSGPRS  240
LCNACGLFWA NRGGLRELSK RSHDIKRIEQ GGEPDTKDLD SVTAIDAHNN LVPFSNGDNS  300
ALVAEN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.111170.0bud| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950378.10.0GATA transcription factor 25-like
SwissprotQ9LRH66e-84GAT25_ARATH; GATA transcription factor 25
TrEMBLD9ZIZ30.0D9ZIZ3_MALDO; GATA domain class transcription factor
STRINGXP_008378645.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-86GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]