PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000303022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GeBP | ||||||||
Protein Properties | Length: 391aa MW: 42824.6 Da PI: 9.5728 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.6 | 3.3e-37 | 166 | 258 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 klfqr+ws+eDe+++L+G++d+++k+g++p++d+ af++f+kks++++v+ksql KirrLKkK+ ++vkk k+ +++k+hdqk+f+lskk+W MDP0000303022 166 KLFQRIWSDEDEVIILKGMVDYTSKKGADPYSDMGAFHDFIKKSLKVDVNKSQLQAKIRRLKKKYATNVKK----KKYNLTKPHDQKVFDLSKKVW 257 579********************************************************************....8999***************** PP DUF573 97 g 97 g MDP0000303022 258 G 258 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.9E-34 | 168 | 258 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSEG QEVSSEEEEG EEEESGSGSD SEPEEPLPXK TSSSAPXAEK 60 KPPPKKPDSS AANSKPQSSS SGSEDDSDSD VDKDLVVKPI ASKPMEETPK TKKPRSKPAA 120 TATPAAKSGS KRPSETEPKD SKRPKKKGAA XEQXPDQVEE EAKKSKLFQR IWSDEDEVII 180 LKGMVDYTSK KGADPYSDMG AFHDFIKKSL KVDVNKSQLQ AKIRRLKKKY ATNVKKKKYN 240 LTKPHDQKVF DLSKKVWGGS GEGXSGXNXP SEQPKSNGKA RNTKTXASIK ADILSSPERS 300 KEAXKXDLGL NPCSLESLSE VIGFDKSFRE LGLPEGVVKQ GLELIGESKR AELKDKWRKL 360 HVAELELFVK RSELMRDQTK VILEALKSSG H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 236 | RRLKKKYATNVKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2835 | 0.0 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371209.2 | 0.0 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A498IXL3 | 0.0 | A0A498IXL3_MALDO; Uncharacterized protein | ||||
STRING | XP_008364114.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008371209.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-28 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | MDP0000303022 |