PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000302297
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 923aa    MW: 101438 Da    PI: 6.2816
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000302297genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-061243435
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                     C+ ++++++ l+C+ ++  lC  C ++ H+
  MDP0000302297 12 VPCDFCSDQPAVLYCRADSAKLCLFCDQHVHS 43
                   57***************************995 PP
2zf-B_box21.45.4e-075499342
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    ++C++++++ ++  C +++  lC++C    H +      H+++pl
  MDP0000302297 54 SQICDNCSSEAVSVRCSTDNLVLCQECDWDAHGScsvtaaHDRTPL 99
                   689*************************999954888888888775 PP
3CCT63.46.8e-22435478144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R +a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  MDP0000302297 435 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 478
                    7789*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.471956IPR000315B-box-type zinc finger
SMARTSM003363.3E-13956IPR000315B-box-type zinc finger
CDDcd000211.74E-81256No hitNo description
PfamPF006432.2E-51253IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2245299IPR000315B-box-type zinc finger
CDDcd000212.40E-75699No hitNo description
SMARTSM003361.85799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.872435477IPR010402CCT domain
PfamPF062036.7E-16435477IPR010402CCT domain
SuperFamilySSF520586.05E-37481650IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-43482655IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082631.4E-10482520IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SMARTSM00369280546569IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036927570594IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036939618642IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520582.38E-22750869IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082632.8E-9751789IPR013210Leucine-rich repeat-containing N-terminal, plant-type
Gene3DG3DSA:3.80.10.102.0E-26752868IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036927839863IPR003591Leucine-rich repeat, typical subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MVSPKSGGVE GVPCDFCSDQ PAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
SSEAVSVRCS TDNLVLCQEC DWDAHGSCSV TAAHDRTPLE GFSGCPSALE LASLLGLDLQ  120
DKNLPARPDP QLQNWDMGLP SVDPSWNGFG MQDLMVPIQN GVVDLTGDMK RQNSGGISGK  180
QKQGIQKQLL ELLKRDLGGG RGGGGSGSEN LVPGTQTRNG WQEENGKGNG DVEGLASIDV  240
RNENGGVGGV AARAASLETV LQQQTPFSTM LMMPEENRDG DMLWDSNPHG QTQIWDFNLG  300
RLRDHEESGP LKVTYGSNVS GFMIKDFSEL MKESSLTDTK MLRDIYQMNS PVGHDDIKFN  360
ITSNNPEGSL GPATSESNNV PIGQPLSGSV FGDDKGSGAS NDISFMEQSF LMRGDSISMR  420
TVGTKADMEL LAQNRGNAML RYKEKKKTRR YDKHIRYESR KARADTRKRV KGRFVKATTE  480
SPDGDALNVW KHGLVDPSNA LQSWNSTLPS PCTWYHITCN SENSVIRVDL GDNNLSGILV  540
PELGILANLE YLEVYGNNLF GSIPEEIGKL KKLVSLDLYQ NNLTGTIPTS LGQLSSLRFM  600
RFYNNRLTGS IPPSLGNLTS LQILELNSNL LTGTVPVEVS NLVQSGTNVS DNMLQATADR  660
SNSTNQVPHR TRIWIRPTKL GVHKKELKNK QRVEERRRKE GEKAKQVALK GIKYAGKWYI  720
KDSTDLCVMG SRVXLVFYLA AVAIASVECY SEGDALSVWK SSLVDPNNVL QSWDPTLRNP  780
CTWFHVTCNS ENSVTRVDLG DANLSGLIVP ELGILANLQY LEVFGNNLFG SIPKEIGNLT  840
KLVSLDLYQN NLTGTIPTSL GHLPSLRFMQ QCIRQSTARD CTPYQFNSYH NNTRSTSSEV  900
SEDGEMNTES LHNISMQCLY VAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4lsx_C1e-5748387010163Somatic embryogenesis receptor kinase 1
4lsx_D1e-5748387010163Somatic embryogenesis receptor kinase 1
6fg8_A4e-5748387029182Somatic embryogenesis receptor kinase 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204GGRGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.268030.0bud| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280792.10.0zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A498IFD10.0A0A498IFD1_MALDO; Uncharacterized protein
STRINGXP_008389931.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.17e-51B-box type zinc finger protein with CCT domain