PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000302279

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 300aa MW: 32761.6 Da PI: 7.5623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000302279	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H MDP0000302279 138 FSCNYCKRKFYSSQALGGHQNAH 160 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.04E-6	133	166	No hit	No description
PROSITE profile	PS50157	11.406	138	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MLSLSLCLLL SLSLLLSFSL ISSHRLINRR NKVLDFTACR NMLTQNLNLE FENDSGVMSQ 60 VTSNIPLQEE SPDASKDSTT TSSCLTNQTN HQQQDPGPVA LDLTLQFCSS DIELKGTGET 120 SSEGAAPPTS EGTNPRVFSC NYCKRKFYSS QALGGHQNAH KRERTMAKRA MRMGMFPDRY 180 TSLASLPLHG SAASAFRSLG IQAHSAVHQN TMVSSDHPRF PVPDTRGVAR FQQGYFGVPV 240 FMDEDDEGMF WPGSFRQVGK EGVGGHYNVQ SAQNPNMNSG TSSAPRNNTS SSSPDLTLKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12641	0.0	bud\| cell culture\| fruit\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008358279.1	0.0	zinc finger protein 7-like isoform X1
Refseq	XP_008358280.1	0.0	zinc finger protein 7-like isoform X1
Swissprot	Q39263	3e-44	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A498HLH1	0.0	A0A498HLH1_MALDO; Uncharacterized protein
STRING	XP_008358279.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-45	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	MDP0000302279

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]