PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000301798
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 584aa    MW: 66288.3 Da    PI: 10.0854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000301798genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.2e-1922929843128
            NAM  43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     P++L   v++++++w+fFs+rd+ky++g r++rat++gyWkatgkd+++++               +grap+ge+tdWvmhey+l
  MDP0000301798 229 YPRTLS--VETGDRQWFFFSPRDRKYPNGGRSSRATRHGYWKATGKDRTLYA--------------IHGRAPSGERTDWVMHEYTL 298
                    466665..77899***********************************9999..............569***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1586394.45E-3434144IPR005491ENT domain
SMARTSM011911.3E-3540113IPR005491ENT domain
PROSITE profilePS5113822.45340127IPR005491ENT domain
PfamPF037354.7E-2842110IPR005491ENT domain
PROSITE profilePS5100517.274175340IPR003441NAC domain
SuperFamilySSF637482.63E-5191215No hitNo description
PfamPF023654.9E-9220298IPR003441NAC domain
SuperFamilySSF1019415.75E-23236304IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
TDDDFLPSHQ NRFQRGGRTS GNGRSAAVSS APLPRMHGDM ETQIHRIEQE AYCSLLRAFS  60
AQSDAITWDK ETLMTNLRKE LRVSDEEHRE LLSRVQADDM IQRIRQWRKS GLQPGTLNAA  120
QPVHDPLPSP TVSASRKKQK TSQSLSLGAP TPELPQSMQP SSSALRRGPP PGPRNKKPKS  180
SEPAGGETSD PLVGRKVWTR WPEDNHFYEA VITNFNRAEP CGEENLPLYP RTLSVETGDR  240
QWFFFSPRDR KYPNGGRSSR ATRHGYWKAT GKDRTLYAIH GRAPSGERTD WVMHEYTLDE  300
EELKTCQNVQ HMVIGTRFKN QALAAFDPEP KRIAGRFARE RYLVQDPSLR DTFLEKLFRD  360
TESSATIFQP LALISTIALA LPAAGQPLRN SLAARVNALP RTKPRRGYTL FLPITCQLGH  420
SCKKSFSTSS FHLSRLLHFK KEILAFTQKP NKYFHEAWER YNELLCYLVL ARTPEKVGIA  480
NPTSLISTSF AIYNHALPNP IIKSCGLVDL HHPRKPITKS CRLADLIRLA NPTFYLLQID  540
FSPSYETQRT HNPDFPSLLQ EGIPRWICFG FNPTPRTEIV ISKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-1723829867140Stress-induced transcription factor NAC1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.84854e-96bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IPY41e-155A0A498IPY4_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.12e-30NAC domain containing protein 16