PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000301666 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 629aa MW: 68044.8 Da PI: 7.3585 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 371 | 429 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ MDP0000301666 371 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 429 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-33 | 355 | 431 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 363 | 431 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 365 | 431 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 370 | 430 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 372 | 429 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MDKGWGLTLD SDSFGYLLNK PPTAAVKLDH HNNKRSSFFG GERMFQGMEF PVKLGRREEQ 60 DASQPSNDNN RMVVDEVDFF SDRKNKLNTN STDDHHQDSK SNGAVSVKKE NWTGLDVNTG 120 LQLVTANTGS DQSMVDDGIS SDHGVNKRAK NHEIKVEFSI FRLMVYSVVG VDYDXQLAQL 180 QVEVQRMNAE NQRLKEMLGQ VTNNYSALQM HLAAVVQRQN HTTAAPADXR SQLDHDQNAE 240 AKSDQEKKQG LVPRQFLNLG PRATAETTDD QVSNSSSEAR TGSASPPQNI NEVAKNDQIG 300 PLDPPNSNNF RDGKRVGGDE SPESQSQGWV PNKVPKLNNS AAPKPIDQST EATMRKARVS 360 VRARSEAPMI TDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTILIT 420 TYEGNHNHPL PPAAMAMAST TTAAASMLLS GSMASADGMN MNPNNLLARA ILPCSSSVAT 480 ISASAPFPTV TLDLTTSPLQ FQRPNTPFQI PNFPGQPQSF GAASQQLPQG FGQALYNQSK 540 FSGLQLSQDL MGSTSSQQQQ MQQTQSSSFA DTVSAITADP SFTAALAAAI TSIIGGGAHP 600 SNNNNSASTT SNNSTGANSN KNISSFPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 357 | 433 | 1 | 76 | WRKY transcription factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11201 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX112905 | 0.0 | JX112905.1 Malus hupehensis WRKY transcription factor 42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008364089.2 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-155 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A498K0F0 | 0.0 | A0A498K0F0_MALDO; Uncharacterized protein | ||||
STRING | XP_008364089.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-133 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000301666 |