PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000301515

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 450aa MW: 49858.2 Da PI: 9.2987

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000301515	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	23.1	2.1e-07	4	53	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyf..paeqpkkfanvhklFGasnvlkllka 48 +C+ C++lr++C+++C ++p++ ++qp++ + lF nv ll+a MDP0000301515 4 SCNXCRILRKGCSENCSIRPCLqwIKTQPSDPPEMDALFDSINVRXLLSA 53 6********************95545667777777777777777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.6E-5	4	53	IPR004883	Lateral organ boundaries, LOB
Pfam	PF06248	3.6E-13	58	155	IPR009361	RZZ complex, subunit Zw10
Pfam	PF10533	3.1E-6	221	260	IPR018872	Zn-cluster domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007067	Biological Process	mitotic nuclear division
GO:0000775	Cellular Component	chromosome, centromeric region
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MRISCNXCRI LRKGCSENCS IRPCLQWIKT QPSDPPEMDA LFDSINVRXL LSAQDLXDPT 60 TPLSAPDLRL LIQRLDSHSL QIKSKIQSXL LXHHQDFANL FSVCNDAVSR SNQISDDVVQ 120 LLSSXSNRPI EAEIGXIMKQ MSAXNKRRKX RNNAVLFLYW TLXSKTXTRD VTVTRTKHHL 180 LQKLRRFEQL AGLDPIELEK RMLEDDDDDE CKEDESETSD SSSEETSNTG SASGPXKRHC 240 SKRRNNQVKK TICMPAIQFK IRSSVLRRHR RPSLHLRXSI SXVPCYNLAS SSSVSGSXQH 300 HGPXSVVFLR RSTAKXKRAF PPXTLTMCPX GGGDKSTSLA AETLPAGGPE SSKDEWACEL 360 QSIXSGGLEA VTGSGGGVEK CGLGLGGFGG LGDYALRNGS VSGPRPVSAE VDSRGCGRHV 420 VWTQAAVAER EXQPPQQPHR FRQQRRVGNR

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MRISCNXCRI LRKGCSENCS IRPCLQWIKT QPSDPPEMDA LFDSINVRXL LSAQDLXDPT  60
TPLSAPDLRL LIQRLDSHSL QIKSKIQSXL LXHHQDFANL FSVCNDAVSR SNQISDDVVQ  120
LLSSXSNRPI EAEIGXIMKQ MSAXNKRRKX RNNAVLFLYW TLXSKTXTRD VTVTRTKHHL  180
LQKLRRFEQL AGLDPIELEK RMLEDDDDDE CKEDESETSD SSSEETSNTG SASGPXKRHC  240
SKRRNNQVKK TICMPAIQFK IRSSVLRRHR RPSLHLRXSI SXVPCYNLAS SSSVSGSXQH  300
HGPXSVVFLR RSTAKXKRAF PPXTLTMCPX GGGDKSTSLA AETLPAGGPE SSKDEWACEL  360
QSIXSGGLEA VTGSGGGVEK CGLGLGGFGG LGDYALRNGS VSGPRPVSAE VDSRGCGRHV  420
VWTQAAVAER EXQPPQQPHR FRQQRRVGNR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	8e-13	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	MDP0000301515