PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000301368
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 474aa    MW: 53009.1 Da    PI: 6.3004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000301368genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.52.4e-141504712374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    + lLl+cA++v++g+le+a+a+L+++s+las dgd+mqR+aayf eALa r+++ +++l  al++++ s   +see+ ++k+f+e+ P+lk++ ++
  MDP0000301368  50 IXLLLTCANHVATGSLENANAALEQISQLASADGDTMQRIAAYFXEALADRILKAWPGLHTALNSTKIS--LVSEEILVRKVFFEMLPFLKVAVVL 143
                    789************************************************************999997..7************************ PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    +NqaIlea+ege++vHiiD+++ +++QW+aLlq L++Rpegpp+lRiTgv++    +ke l ++++rL+++Ae+l++pf+f + ++++le+l++e+
  MDP0000301368 144 TNQAILEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGVHQ----QKEVLDQMAHRLTEVAEKLDIPFQFCP-IVSKLENLDMEK 234
                    ****************************************************....9**************************.7999******** PP

           GRAS 194 LrvkpgEalaVnlvlqlhrll......................................................desvsles..erdevLklvks 233
                    Lrvk+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+++++
  MDP0000301368 235 LRVKTGEALAISSVLQLHSLLasddellkrksplasrgsngnhlpralqxshgtlgellekemgnryspspxsnsSSPLSLTPwaKLDSFLNAFWD 330
                    ************************************************************************988666666667789********* PP

           GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                    l Pkv+v++eq+++hn+++++er+leal+ y++lfd+le+++pr+s er kvE++l+g+ei+n++aceg+er+erhe+l+kW +rl+ aGF++vpl
  MDP0000301368 331 LTPKVMVITEQDSNHNGSTLMERLLEALYSYATLFDCLESTMPRTSLERLKVEKMLFGEEIKNIIACEGSERIERHEKLGKWIQRLDLAGFGNVPL 426
                    ************************************************************************************************ PP

           GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    s++ + qak++l+ ++ +gyr+ ee+g+++  W+drpL+svSaWr
  MDP0000301368 427 SYYGMLQAKRMLQGYGCNGYRMREENGCVLVSWQDRPLFSVSAWR 471
                    ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.96123451IPR005202Transcription factor GRAS
PfamPF035148.3E-13950471IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MTPMFQDEGS SSAPSSPLQF FSTMSLSPSL GSPYPWLKEL KSEERGLYLI XLLLTCANHV  60
ATGSLENANA ALEQISQLAS ADGDTMQRIA AYFXEALADR ILKAWPGLHT ALNSTKISLV  120
SEEILVRKVF FEMLPFLKVA VVLTNQAILE AMEGEKMVHI IDLNAAEPAQ WIALLQVLSA  180
RPEGPPHLRI TGVHQQKEVL DQMAHRLTEV AEKLDIPFQF CPIVSKLENL DMEKLRVKTG  240
EALAISSVLQ LHSLLASDDE LLKRKSPLAS RGSNGNHLPR ALQXSHGTLG ELLEKEMGNR  300
YSPSPXSNSS SPLSLTPWAK LDSFLNAFWD LTPKVMVITE QDSNHNGSTL MERLLEALYS  360
YATLFDCLES TMPRTSLERL KVEKMLFGEE IKNIIACEGS ERIERHEKLG KWIQRLDLAG  420
FGNVPLSYYG MLQAKRMLQG YGCNGYRMRE ENGCVLVSWQ DRPLFSVSAW RCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-46534718375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008349876.20.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A498INY40.0A0A498INY4_MALDO; Uncharacterized protein
STRINGXP_008349876.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]