PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000301101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 483aa MW: 53803.5 Da PI: 5.0835 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.5 | 1.2e-34 | 16 | 106 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++++d++++e++sws+n++sfvv+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +++k+ll++i MDP0000301101 16 FLLKTYNMVDDSATDEIVSWSSNKKSFVVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKSDPER---------WEFANEDFIQDQKHLLKNI 102 9**************************************************************99988.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k MDP0000301101 103 HRRK 106 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.67E-34 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-58 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.3E-37 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.9E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-18 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-18 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.1E-18 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MEGGSTAGGG GGPAPFLLKT YNMVDDSATD EIVSWSSNKK SFVVWNPPEF SRVLLPTYFK 60 HNNFSSFIRQ LNTYGFRKSD PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 PERAALDDEI EKLSHDKDTL EASISTFKQQ QSAAKLQLEN LAQRVSGMEQ RQKNLLTFLD 180 EAVHNPNFIE HLSRKIESMD FSAYNKKRRL PDIENLQPVV ENGFVDNQSS SRSEFGNVFH 240 QDFSSKLRLE LSPAVSDMNL VSLSTQSSNE DGGSSTRKIS EELKGAQMRT EGLLFAPETL 300 ELSDTGTSFA FKMDSLLLLK APTVGSPIRH SLQPGLPSNE EGDGHISCQL NLTLASTPSQ 360 VNNSPYSAAV PQVGQDINKS AASELNDNGK EPDLRAFTKK NLADDDKPKT SFPEATHNNQ 420 APALVSVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRFGHG MSRTVKDAET 480 LTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-20 | 9 | 105 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-20 | 9 | 105 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-20 | 9 | 105 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR132193 | 0.0 | KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008380467.1 | 0.0 | heat stress transcription factor A-5-like | ||||
Refseq | XP_008380468.1 | 0.0 | heat stress transcription factor A-5-like | ||||
Swissprot | Q94BZ5 | 1e-158 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A172C4J7 | 0.0 | A0A172C4J7_9ROSA; Heat shock factor 2 | ||||
STRING | XP_008380467.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-161 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000301101 |
Publications ? help Back to Top | |||
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