PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000299944

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 409aa MW: 46407.7 Da PI: 6.5149

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000299944	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.8	9.3e-45	91	216	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppG+rF+P d el+v+yL kkv +++l+ + i ev++y+++P+ L +k+++ ++wyfF++rd+ky++g+r++ra+ +gyWkatg dkev+s++g MDP0000299944 91 PPGYRFNPFDGELIVHYLMKKVLDQPLPP-NRIFEVNLYRYNPEVLAEKYEKYGDKWYFFTPRDRKYRNGSRPKRAAGDGYWKATGADKEVKSSDG 185 9***********************999.77**********988888889************************************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg +k Lvfy+g+ pkg kt+W+mhe+++ MDP0000299944 186 AVVGSRKALVFYRGKPPKGDKTNWIMHEFKV 216 ***************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-52	88	243	IPR003441	NAC domain
PROSITE profile	PS51005	52.653	90	243	IPR003441	NAC domain
Pfam	PF02365	2.8E-23	91	215	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEPVEQSHPD HKASVTIITQ QVASYSLSPN KQSPAQGGQG QFTPTSETGV SLTTNVSAAA 60 GGTDHELSED EANSLHNNLI KDQDEFFNSF PPGYRFNPFD GELIVHYLMK KVLDQPLPPN 120 RIFEVNLYRY NPEVLAEKYE KYGDKWYFFT PRDRKYRNGS RPKRAAGDGY WKATGADKEV 180 KSSDGAVVGS RKALVFYRGK PPKGDKTNWI MHEFKVKDSP VRSRRGENDM RLDNWVLCRI 240 YKKDGQNGKR CESRNHAEIH SPFPHRINDE SMEIEMSGDI VDPLHEYDPA LEYDHKYSYK 300 AYPHMTPLPN ISGGLPVNMI SNNRIQSVEA ASMNAGSYYA NMGYSQPICV RPPSMSSESV 360 LGPYRYIDES TILQDDMMFG MKGFEHSLYS TNNYAGQFSA LDHVFPYTE

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEPVEQSHPD HKASVTIITQ QVASYSLSPN KQSPAQGGQG QFTPTSETGV SLTTNVSAAA  60
GGTDHELSED EANSLHNNLI KDQDEFFNSF PPGYRFNPFD GELIVHYLMK KVLDQPLPPN  120
RIFEVNLYRY NPEVLAEKYE KYGDKWYFFT PRDRKYRNGS RPKRAAGDGY WKATGADKEV  180
KSSDGAVVGS RKALVFYRGK PPKGDKTNWI MHEFKVKDSP VRSRRGENDM RLDNWVLCRI  240
YKKDGQNGKR CESRNHAEIH SPFPHRINDE SMEIEMSGDI VDPLHEYDPA LEYDHKYSYK  300
AYPHMTPLPN ISGGLPVNMI SNNRIQSVEA ASMNAGSYYA NMGYSQPICV RPPSMSSESV  360
LGPYRYIDES TILQDDMMFG MKGFEHSLYS TNNYAGQFSA LDHVFPYTE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-50	89	243	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-50	89	243	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-50	89	243	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-50	89	243	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-50	89	243	19	168	NAC domain-containing protein 19
3swm_B	3e-50	89	243	19	168	NAC domain-containing protein 19
3swm_C	3e-50	89	243	19	168	NAC domain-containing protein 19
3swm_D	3e-50	89	243	19	168	NAC domain-containing protein 19
3swp_A	3e-50	89	243	19	168	NAC domain-containing protein 19
3swp_B	3e-50	89	243	19	168	NAC domain-containing protein 19
3swp_C	3e-50	89	243	19	168	NAC domain-containing protein 19
3swp_D	3e-50	89	243	19	168	NAC domain-containing protein 19
4dul_A	3e-50	89	243	16	165	NAC domain-containing protein 19
4dul_B	3e-50	89	243	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017185577.1	0.0	NAC domain-containing protein 1-like
TrEMBL	A0A498KCL4	0.0	A0A498KCL4_MALDO; Uncharacterized protein
STRING	XP_008363571.1	0.0	(Malus domestica)
STRING	XP_008363578.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-58	NAC domain containing protein 32

Link Out ? help Back to Top
Phytozome	MDP0000299944