PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000299774

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HB-other

Protein Properties

Length: 223aa MW: 25004.7 Da PI: 10.7466

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000299774	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.7e-09	156	203	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k q+e+Le +++k++ p+ ++ + + ++L+ ++V WF +R MDP0000299774 156 RLKKAQVETLEGVYRKTKRPTNAMVSSMVHVTNLPRKRVVKWFEDKRS 203 6789****************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.831	148	208	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-9	154	205	IPR009057	Homeodomain-like
CDD	cd00086	5.29E-6	154	202	No hit	No description
SMART	SM00389	8.8E-4	154	212	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.5E-9	155	213	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-6	156	203	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MAFASALDTP KGLHFLPLPS SSRHERSPTN LVLPRHFPTR FSSTIALARR RNHRAEVAPS 60 RTKIKKIKTL AAELCLDRAV VLELLREPPP SLLIMCVTLP DEPATVVSVS QPNSVETVVE 120 TTGETVVETT TDSVELESAA KVPVHARQQK FSAQKRLKKA QVETLEGVYR KTKRPTNAMV 180 SSMVHVTNLP RKRVVKWFED KRSEDXVPDS RQPYQRPIPN TVL

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028962908.1	1e-103	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	3e-51	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A314U752	7e-94	A0A314U752_PRUYE; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
STRING	XP_008352054.1	9e-90	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10181	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	4e-39	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	MDP0000299774

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]