PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000299726

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 649aa MW: 75646.6 Da PI: 8.2355

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000299726	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.8e-23	85	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA e+GFsvr+++skk+ ++gei++++fvC+keg++++e +e+++r t+ gCka+l v ++k g + vt +++ HnH+++ MDP0000299726 85 EFYNNYAMEAGFSVRMHSSKKN-KDGEIMRKEFVCNKEGSNTKEWIG--DEQKHRGLTKKGCKARLIVVRSKLGGYAVTIFHEGHNHPMT 171 6*************999998.8899************9987..89999*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-20	85	171	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-8	318	353	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MAIEVTRTNE MPNQVMEAME ANEMTIKVMG ADEMPVQVME AYEMQVPMEN QSEIVAGICF 60 FYPQVTDEFK PTIGQYFETL DEVIEFYNNY AMEAGFSVRM HSSKKNKDGE IMRKEFVCNK 120 EGSNTKEWIG DEQKHRGLTK KGCKARLIVV RSKLGGYAVT IFHEGHNHPM TSPRRRHLLK 180 SHRKVTKCHT ILADQLDIAN IPPHKQFNIL GLQVGGIENV GCTQKDLYNY RSKVRNKMKG 240 HDGKMLHDHF LLEQERNSEF TFKIQVDEEH KITQCFWADA SSRQAYKFYG DVVIFDTTYN 300 TNRYSMIFAP FMSVNNHGDA PKMIITDQDL AMTKAIPYCF PNTFHRFCTW HILDKFSSKL 360 PPMKYKDHYL DFKACIWESE TIEEFDVKWM AVVSKSGLSG NGWLQSIYRI RSTWVPTYVN 420 HVFSANCSTS QKAENGHLFL KKYVSKNNSF LEFMVNYNRA LARQRHSELK ADHIDLNERP 480 KLKCPIKMDA QMANIYTRSS YLDFQEQLWE SYSYNIELTS ENDTCSMFKV LPIDDEKGRV 540 REILYEKSRD FASYEYILKR WTKSAKSSVT VSNVEISVNK SVLKRRGKLF QQYSHLIDKV 600 ILNDEASKLF CEAMDVVNEK IKPLVGGTNE MWNLLQPKEI WNVVQKENR

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MAIEVTRTNE MPNQVMEAME ANEMTIKVMG ADEMPVQVME AYEMQVPMEN QSEIVAGICF  60
FYPQVTDEFK PTIGQYFETL DEVIEFYNNY AMEAGFSVRM HSSKKNKDGE IMRKEFVCNK  120
EGSNTKEWIG DEQKHRGLTK KGCKARLIVV RSKLGGYAVT IFHEGHNHPM TSPRRRHLLK  180
SHRKVTKCHT ILADQLDIAN IPPHKQFNIL GLQVGGIENV GCTQKDLYNY RSKVRNKMKG  240
HDGKMLHDHF LLEQERNSEF TFKIQVDEEH KITQCFWADA SSRQAYKFYG DVVIFDTTYN  300
TNRYSMIFAP FMSVNNHGDA PKMIITDQDL AMTKAIPYCF PNTFHRFCTW HILDKFSSKL  360
PPMKYKDHYL DFKACIWESE TIEEFDVKWM AVVSKSGLSG NGWLQSIYRI RSTWVPTYVN  420
HVFSANCSTS QKAENGHLFL KKYVSKNNSF LEFMVNYNRA LARQRHSELK ADHIDLNERP  480
KLKCPIKMDA QMANIYTRSS YLDFQEQLWE SYSYNIELTS ENDTCSMFKV LPIDDEKGRV  540
REILYEKSRD FASYEYILKR WTKSAKSSVT VSNVEISVNK SVLKRRGKLF QQYSHLIDKV  600
ILNDEASKLF CEAMDVVNEK IKPLVGGTNE MWNLLQPKEI WNVVQKENR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008356762.2	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4URE3	0.0	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_008365955.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-82	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000299726