PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000298778

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 331aa MW: 36226 Da PI: 9.6976

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000298778	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky MDP0000298778 60 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.09E-16	54	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.986	55	109	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-18	58	107	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.3E-7	58	110	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-11	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-11	60	104	IPR001005	SANT/Myb domain
CDD	cd00167	2.22E-8	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGLPGLNPMP PPTTGAASAT AATSTTAACT SSSAPANAAS MSADDQSKKI RKPYTITKSR 60 ESWTEQEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK KGTSEHVPPP 120 RPKRKATHPY PQKAPKSAAX VSQVAGPFQS SSXLLEHGYV YQPDSSIVLG TPVNAATLLS 180 WSYNSVPPVN VXQTIKDEGR LSGPTVTHNS CYSSSNESNP TNWKVSETVD RVDPGQPHRV 240 LPDFAQVYKF IGSVFDPSAI SHLERLRQLD PINFETALLL MRNLSINLTS PEFQDHRKLI 300 TSYAVGSDKT KSDGNCNFSR IGKSENAILS A

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16616	0.0	bud\| fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008354011.2	0.0	protein REVEILLE 3-like
Swissprot	Q6R0H0	1e-102	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A498KI09	0.0	A0A498KI09_MALDO; Uncharacterized protein
STRING	XP_008343412.1	0.0	(Malus domestica)
STRING	XP_008345636.1	0.0	(Malus domestica)
STRING	XP_008354011.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	1e-102	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000298778

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]