PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000298233
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 573aa    MW: 64288.5 Da    PI: 8.9956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000298233genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309.2e-103761327
                   S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   + +C++++r+G CkyG  C+++H++
  MDP0000298233 37 QTECKYYLRSGGCKYGKDCRYSHSK 61
                   568********************95 PP
2zf-CCCH36.58.2e-1281106126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +++++C++++rtG Cky ++C+F+H+
  MDP0000298233  81 PGERECPYYMRTGSCKYASNCRFNHP 106
                    5789*********************9 PP
3zf-CCCH26.61.1e-08217243127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C++f+rtG Ck+ ++Ck++H++
  MDP0000298233 217 PGQPDCSYFLRTGDCKFKSNCKYHHPK 243
                    5789*********************96 PP
4zf-CCCH33.38.2e-11265288326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C +++r+G+Ck+G+ CkF H+
  MDP0000298233 265 QNICTHYSRYGICKFGPACKFDHS 288
                    679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.5913462IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-53461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-53761IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-73861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-54060IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13180108IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-680107IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-882106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-583107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-486105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352216244IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4216243IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6218243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5221244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6260288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446262290IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4262289IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8265288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001267289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.10000.001532569IPR023214HAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MENLMSCRSW IRQRMWRRTE LVPRERVKDE SAENPSQTEC KYYLRSGGCK YGKDCRYSHS  60
KVKPSVAPVL ELNFLGLPIR PGERECPYYM RTGSCKYASN CRFNHPDPTA IGGSDPPSXX  120
GKDGPASLQV ASQXTVAXWS APRPLNEAPV YTPMMIPPPQ GVSSQNSEWN GCRAPAYIPE  180
SSMPAXPPYM MNNSVTETNV YKQYPLQXQV EEFPERPGQP DCSYFLRTGD CKFKSNCKYH  240
HPKTQTAVAP LFTLSDKGLP LRPDQNICTH YSRYGICKFG PACKFDHSSH ISSSTTSGPD  300
HQLPYGDWAT TNGAGIAGSR SGTDASVVYR TCCGVCVVCC MSWHRRGPVK VTVNSXHISQ  360
RISXLRSRHR EGMYEVDGEL ISYEXTYTRT KFNGIKWDSL SLTPSLGGPS ETPKSERTAK  420
TTSLSRRLAR LLALLDRRQR TSSLSPVQPN FYSRLPSQFS LLPACPKRTP WPPSLFCFVS  480
VTKFTWEGVR KLSNDSRSTL NLLHFLPNRS WDRLLVVVDK SPECGDGGAE GYWIRKCEDA  540
WHLCDPDAEK VVEALRKAGV KVAVVSNFDA RLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130551e-119fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959756.10.0zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A498JJL40.0A0A498JJL4_MALDO; Uncharacterized protein
STRINGXP_008337071.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-102C3H family protein