PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000298182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 35850.6 Da PI: 8.338 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 11 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhP+deelv++yL kkv++++ + evd++k+ePwd+p+++ + kewyf+s+rd+kyatg r+nrat++gyWkatgkd+++ + k MDP0000298182 11 LPPGFRFHPRDEELVCDYLMKKVTQSDS---ILMIEVDLNKSEPWDIPESACVGGKEWYFYSQRDRKYATGLRTNRATATGYWKATGKDRSIRR-K 102 79**********************9993...3588*************7777799**************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 g+lvg++ktLvfy+grapkg+k+dWvmhe+rle MDP0000298182 103 GSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 135 99****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-59 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.344 | 11 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSNISVVEAK LPPGFRFHPR DEELVCDYLM KKVTQSDSIL MIEVDLNKSE PWDIPESACV 60 GGKEWYFYSQ RDRKYATGLR TNRATATGYW KATGKDRSIR RKGSLVGMRK TLVFYQGRAP 120 KGRKSDWVMH EFRLEGPPKI SPLKEDWVLC RVFYKNREIA AKPSMGVSCY DDTSTLTLPA 180 LMDSYISFDG QTQIQTHTET QPQDYEQVPC FSMFSQNQTN PIFTHVDITS SQPSIPTKHN 240 NNTNTTTFGG LPNVTNFLDP FSCDKKVLKA VLSHLTKMEK SIYPTLDGSS PSFGEGSSSE 300 NYLSDVGMPK NIWSHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 6 | 156 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 6 | 156 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 6 | 156 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 6 | 156 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 6 | 156 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-49 | 6 | 156 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 6 | 156 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.155 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198123 | 0.0 | KF198123.1 Malus hupehensis NAC domain protein (NAC88) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008383028.1 | 0.0 | LOW QUALITY PROTEIN: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-120 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A498ITN5 | 0.0 | A0A498ITN5_MALDO; Uncharacterized protein | ||||
STRING | XP_008383028.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-115 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000298182 |