PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000297978
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 381aa    MW: 40837.2 Da    PI: 9.7905
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000297978genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.42.1e-4380157178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q+
  MDP0000297978  80 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPQP 157
                    6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-3574142IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.43678155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-4179160IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3281154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGSSSMTESG SSSSSSPPNS SAESLNGLKF GQTIYFEDVG FGAQHKSSSG SAAGSSSAGA  60
TPPKKQRGGG NMGQLGQPPR CQVEGCQVDL SDAKAYYSRH KVCGLHSKTP TVIVAGLEQR  120
FCQQCSRFHL LPEFDQGKRS CRRRLAGHNE RRRKPQPGSI LSARFGRLSS SLYENSNKVG  180
SYLMDFTAYP RVSGRDAWTT TRTSERAPVV QNANDAGKFL QQPWQSNSGI TTSGFYMQGS  240
AGGTSYPGPG IPPGECITVA TDSSRALSLL SNQPWGSRNR VSGVGMNSLM NTQGIPVAQP  300
TPHAATSNHF PTTLWGFKGN ENGSSSHEML PDLGLGQISQ PLSSQYSGVL ELSQQGRRQQ  360
HMELGHTRGY DSTSQQMNWS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30811541184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.93120.0bud| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0774420.0KM077442.1 Pyrus x bretschneideri squamosa promoter binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392088.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A498I3G20.0A0A498I3G2_MALDO; Uncharacterized protein
STRINGXP_008392088.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-67squamosa promoter binding protein-like 9