PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000297093
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 392aa    MW: 43571 Da    PI: 6.1109
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000297093genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.71.4e-0960105342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     r+C+ +e+ ++ + C+ ++  lC  C   +H+       H++vp+
  MDP0000297093  60 VRVCEACERAPAAFLCKADSASLCTACDADIHSAnplarrHQRVPI 105
                    689*****************************66899999**9997 PP
2CCT69.87.1e-24323366144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  MDP0000297093 323 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 366
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5661562IPR000315B-box-type zinc finger
SMARTSM003360.00281562IPR000315B-box-type zinc finger
CDDcd000212.47E-61862No hitNo description
PROSITE profilePS5011911.70458105IPR000315B-box-type zinc finger
PfamPF006431.4E-760105IPR000315B-box-type zinc finger
CDDcd000211.29E-861105No hitNo description
SMARTSM003368.2E-1163105IPR000315B-box-type zinc finger
PfamPF062037.7E-18323365IPR010402CCT domain
PROSITE profilePS5101716.648323365IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLKEDQSNGT AANXNCARVC DTCRAAACTV FCRADSAYLC SGCDATIHAV NCVASHHERV  60
RVCEACERAP AAFLCKADSA SLCTACDADI HSANPLARRH QRVPILPISG CLYGPQAIEH  120
GRMKLGRSAT AEMEDGFMNQ EGDETIDEED EDEAASWLLL NPVKNNNNNN TKNNGLFFGV  180
DVDEYLDLVE YNSCADQNNQ FTDHHQQEQQ QEQHYGVAHK NYGGDSVVPV HQYGEVAKAH  240
QMQQLQKQSF HQLGLEYESS KAAYSYNGSL SHSVSVSSMD VGVVPNSTMS DISISHPRTP  300
TGTXDLFSGS SIQMPTQLSP MDREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG  360
RFAKRTEMEV EVDQMFSTTL MAENGYGIVP SF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.142220.0bud| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379481.20.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-136COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A220D3E50.0A0A220D3E5_MALDO; Zinc finger protein CONSTANS-LIKE 2
STRINGXP_008379481.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-107CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]