PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000296271

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 419aa MW: 47669.3 Da PI: 9.3417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000296271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.3	4.2e-07	94	141	41	90
FAR1 41 reeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++e +e+++r t+ gCka+l v +k g + +t +++ HnH+++ MDP0000296271 94 NTKEW--IGDEQKHRGLTKEGCKARLIVVISKLGGYAITIFDEGHNHQMT 141 44433..34789999********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-5	99	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
IRFERYPXRA SQKRSSCVLV TXIEANEMAI EVTGTNEMPI QVMEAMEANE MTIEVTGTDE 60 MPVQVMEANE MQVLMENQSE IVVGICFFNP QGSNTKEWIG DEQKHRGLTK EGCKARLIVV 120 ISKLGGYAIT IFDEGHNHQM TSPXRRHLLK SHRKVTKCHK ILVDXLNMAN IPPHKQFDIL 180 GLQVGIRSTW VPTYVNHVFS ANCSTSQRAK SGHSFLKKYV SKNNSFXEFM VKYNRALLHQ 240 RHSELNADHI DLNERPKLKC PIKMDXQMAN IYTRSSYXDF QEQLWXSHSY NIELTMILAA 300 CLKFCPLMMK SVEFVKFYLK NPGILRHASK LFCEAMDVVN EKIKPLVGGT NENVEPSATK 360 GDMECRAKRK SIVDDVGFLE PYPVKTKGSG KRLKKGKEKG KCKKRVNGNL CHGCGAIWS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

IRFERYPXRA SQKRSSCVLV TXIEANEMAI EVTGTNEMPI QVMEAMEANE MTIEVTGTDE  60
MPVQVMEANE MQVLMENQSE IVVGICFFNP QGSNTKEWIG DEQKHRGLTK EGCKARLIVV  120
ISKLGGYAIT IFDEGHNHQM TSPXRRHLLK SHRKVTKCHK ILVDXLNMAN IPPHKQFDIL  180
GLQVGIRSTW VPTYVNHVFS ANCSTSQRAK SGHSFLKKYV SKNNSFXEFM VKYNRALLHQ  240
RHSELNADHI DLNERPKLKC PIKMDXQMAN IYTRSSYXDF QEQLWXSHSY NIELTMILAA  300
CLKFCPLMMK SVEFVKFYLK NPGILRHASK LFCEAMDVVN EKIKPLVGGT NENVEPSATK  360
GDMECRAKRK SIVDDVGFLE PYPVKTKGSG KRLKKGKEKG KCKKRVNGNL CHGCGAIWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028948078.1	1e-108	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	V4URE3	2e-35	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_008351123.1	1e-107	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13280	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	9e-15	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000296271