PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000295902
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 263aa    MW: 28554 Da    PI: 5.5776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000295902genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-194796255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t +eAa a++ a++kl+g
  MDP0000295902 47 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSDEAALAYDVAARKLYG 96
                   69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-3046106No hitNo description
PROSITE profilePS5103222.347104IPR001471AP2/ERF domain
SMARTSM003801.1E-3547110IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2147105IPR016177DNA-binding domain
PfamPF008476.3E-144796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3047105IPR001471AP2/ERF domain
PRINTSPR003675.2E-104859IPR001471AP2/ERF domain
PRINTSPR003675.2E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLKSEMNGGG STSVXVEERK PSKWPAQASS RKGCMRGKGG PENAMCTYKG VRQRTWGKWV  60
AEIREPNRGA RLWLGTFDTS DEAALAYDVA ARKLYGSVAK LNLPEQRVPH CHQHHLNQHL  120
QNQVVPSPAN PXVXPQIPNQ TLVQNNPSGT GTNPAGYXAX VNDIAVPFIG DNFLXVKADQ  180
PHGNWAVALP EQGGTEVGEN MSSGGNNEME GILWGNTSGN FPVFDDSIWT EAXMSLDLPA  240
VEDYGVFGGG FVDGTGWETM HSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1848104360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347385.20.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-180A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_008377237.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-46ERF family protein