PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000295812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 404aa MW: 45112.1 Da PI: 10.2783 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.7 | 1.5e-10 | 260 | 279 | 3 | 22 |
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D y+WrKYGqK++kgs++pr MDP0000295812 260 DDYSWRKYGQKPIKGSPHPR 279 99*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.1E-17 | 210 | 256 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-10 | 246 | 284 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.817 | 253 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-8 | 255 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-4 | 258 | 312 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-7 | 260 | 289 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAVDFMGYRN TXSSSSFSAK LEENAVQEAA SGLESVEKLI RLLSQAQQNQ HQEKYPSTAM 60 DMDCRAVADV AVSKFKKVIS LLGRTRTGHA RFRRAPLTVN SGSSFQPQYQ SHSQDIVVKQ 120 APLESTKVYH ATPIQQIPPS HHHHHSMVLE STMDSSNTMN FSYSAATSFM SSLTGDSDSK 180 QPMSSSAFQI TNLSQVSSAG KPPLSSTSLK RKCSSENLGS GKCGAGSSGR CHCSKKRKLR 240 QKRVVRVPAI SLKMADIPPD DYSWRKYGQK PIKGSPHPRI ELRFSGFCSW DRRACPPEEE 300 KNEEEDPVED KSKRKTRWTX RRGRPGGQTR KTKLDSXFCX IRRLWTPNLG LDVLDFLMCE 360 AVRKKEMRAA IYEDAAVVLG WSGEVVEQGE QSSKALRSRA KQRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13065 | 0.0 | bud| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ598139 | 0.0 | FJ598139.1 Malus hupehensis WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008384448.2 | 0.0 | probable WRKY transcription factor 7 | ||||
TrEMBL | A0A498HZG0 | 0.0 | A0A498HZG0_MALDO; Uncharacterized protein | ||||
STRING | XP_008384448.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 2e-51 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000295812 |