PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000295480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | CAMTA | ||||||||
Protein Properties | Length: 237aa MW: 26812.9 Da PI: 6.9195 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 100.8 | 1e-31 | 26 | 102 | 3 | 78 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggv 78 +e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkk gktv+E+he+LKv+g MDP0000295480 26 EEaKSRWLRPNEIHAILYNHKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKXGKTVKEAHEHLKVQGS 102 4559***********************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 43.555 | 21 | 164 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.0E-35 | 24 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.3E-27 | 27 | 104 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MENQLVGSEI HGFHTMQDLD VPTIMEEAKS RWLRPNEIHA ILYNHKYFTI HVKPVNLPKS 60 GTIVLFDRKM LRNFRKDGHN WKKKKXGKTV KEAHEHLKVQ GSPVTPVNSN SSSVSDPSAP 120 WFLSEELDSG ANNAYCAGEN ELPELGDRLT VNNHEQRLHD INTLEWEELL VTNDSKERLR 180 GLKVAPAEVS ADQNPESDTE EDSTGPAGNK LKSVLKDLLY VFRPCSAQRK HNKNIVG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951238.1 | 2e-95 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Swissprot | O23463 | 7e-58 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A498HK70 | 1e-93 | A0A498HK70_MALDO; Uncharacterized protein | ||||
STRING | XP_008368335.1 | 1e-93 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34891 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 1e-51 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | MDP0000295480 |
Publications ? help Back to Top | |||
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