PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000295305
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 862aa    MW: 94302.2 Da    PI: 7.1746
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000295305genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.52.3e-546757781101
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw++q   i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv
  MDP0000295305 675 QLQTFWANQyqeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 770
                    89******998999********************************************************************************** PP

          NF-YC  94 divprdel 101
                    divpr++l
  MDP0000295305 771 DIVPREDL 778
                    *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016994.5E-1893234IPR004837Sodium/calcium exchanger membrane region
PfamPF016991.1E-25419569IPR004837Sodium/calcium exchanger membrane region
SuperFamilySSF471135.53E-32665769IPR009072Histone-fold
PfamPF008089.6E-21697760IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.8E-37698775IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006814Biological Processsodium ion transport
GO:0010163Biological Processhigh-affinity potassium ion import
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0034399Cellular Componentnuclear periphery
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
GO:0015081Molecular Functionsodium ion transmembrane transporter activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MAISLSSSFK TCILSLSLLS FFLFFLLXTX TPNSPNYXNP SPITFHRSLI ATAAKTPSCS  60
SAAVTHSDGL FNYLYLHFCL FRQNPFLSLS SLSLILLLLF YILIKTAQDH FSLVTTKLVF  120
ALDLTPSMAA VTLLALGNGA PDVFASVAAV RTGQYRTGFG AILSAGTFVS AFVVGFVAIY  180
AAPFPLKPAP FVRDVMFYLT AALFLFYVYL SAEIYLWQAV GFVGFYLFFV GLVFWMDLGM  240
GGGGKESRVE AGSVGDIEIQ RGLVAPDSRI GHVLXSSEDR KGSFGFGRAL GMVCLKSLRL  300
KLWAYEMDDI GEKWRSSRVG YHISRAWELP VSFLLKLTIP QASPSEWSRF YMSANIALCP  360
LALLYACNSF MPFNHPVVFL LSNTHLPLWL VILLASSSLA LLHYAVEKDP PKTEQLPVLL  420
IAFVMSVFWI STTAGELLNC LAALGTLLEL PPALLGLTVL AWGNSVGDLV ADVAVAKAGH  480
PAMAMAGCFA GPMFNMLIGL GTALVIQTYD VYPEAYELQF HVGIVIAFVF LLLSLMGSLL  540
VITWCRFRVP RFWGFCLVGL YVVFMAVSLA MGSAGIMALV PLVTLLNVAM VLDNLQSSAE  600
AAPTACLIKG SGAQLTYGSN PYQHNQMVGS PNPGSVAATV GAMQSASQSP GAQLAQHQLA  660
YQHIHQQQQQ QLQQQLQTFW ANQYQEIDKV TDFKNHSLPL ARIKKIMKAD EDVRMISAEA  720
PVIFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDLKD  780
EVLASIPRGT VSVGGPADAL PYCYMPPQHA PQVGDPGMIM GKPMMDPSXY AQQSHPSXCG  840
SRHRTSSSXH QIISGRNIEA EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-56683775395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1747753RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtMembrane-localized H(+)-dependent K(+) and Na(+) transporter. {ECO:0000269|PubMed:21945443}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370505.20.0cation/calcium exchanger 5
SwissprotO040340.0CCX5_ARATH; Cation/calcium exchanger 5
TrEMBLA0A498K6G60.0A0A498K6G6_MALDO; Uncharacterized protein
STRINGXP_008370505.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF989722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-77nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Mäser P, et al.
    Phylogenetic relationships within cation transporter families of Arabidopsis.
    Plant Physiol., 2001. 126(4): p. 1646-67
    [PMID:11500563]
  2. Shigaki T,Rees I,Nakhleh L,Hirschi KD
    Identification of three distinct phylogenetic groups of CAX cation/proton antiporters.
    J. Mol. Evol., 2006. 63(6): p. 815-25
    [PMID:17086450]
  3. Zhang X,Zhang M,Takano T,Liu S
    Characterization of an AtCCX5 gene from Arabidopsis thaliana that involves in high-affinity K⁺ uptake and Na⁺ transport in yeast.
    Biochem. Biophys. Res. Commun., 2011. 414(1): p. 96-100
    [PMID:21945443]
  4. Wang F, et al.
    Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis.
    J. Exp. Bot., 2016. 67(12): p. 3747-62
    [PMID:26889007]
  5. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]