PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000295064 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 1177aa MW: 130278 Da PI: 8.0378 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 1016 | 1035 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ MDP0000295064 1016 FSCPLCFKTFNRYNNMQMHM 1035 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.0005 | 1100 | 1122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ MDP0000295064 1100 FMCRKCGKAFAVRGDWRTHEKNC 1122 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.160.50 | 3.4E-25 | 351 | 560 | No hit | No description |
Pfam | PF01103 | 1.1E-41 | 393 | 745 | IPR000184 | Bacterial surface antigen (D15) |
Gene3D | G3DSA:2.40.160.50 | 3.4E-25 | 598 | 733 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 1016 | 1035 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 1016 | 1043 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.61 | 1016 | 1038 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1018 | 1038 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.14E-6 | 1082 | 1120 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-5 | 1096 | 1120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 1100 | 1120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 1100 | 1120 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0019867 | Cellular Component | outer membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1177 aa Download sequence Send to blast |
MPPNDDVRFT SSPSAKVPRS PENRHVDLTV LFARTRNSFS QLIDSLRIRS SFPKFPPLPI 60 LCSASLSLTR HADSAESEWR NRNADRGRFV GKSPLLCSAS LALTRPDEST QSQQKGHASS 120 RHDEERVLIS EVLVRNKDGE ELERKDLEME ALAALKACRA NSALTVREVQ EDVHRIIDSG 180 YFCSCMPVAV DTRDGIRLIF QVKPNQEFQG LVCEGANVLP AKFLKDAFCD GYGKVINLKR 240 LNEVISSIND WYMDRGLFAM VSAVEILSGG ILKLQVSETE VNNISMRFLD RKTGEPTIGK 300 TKPXTILRQL TTKKGQVYSM LQGKRDVETV LTMGLMEDVS IIPQPADAGK VDITMNVVER 360 PSGGFSAGGG ISSGITSGPL SGLIGSFAYS HRNLFGRNQK LHVSLERGQI DSIFRINYSD 420 PWIAGDDKRT SRTIMVQNST TPGTLIHGNQ LNGSNLTIGR VTAGIEFSRP IRPKFSGTAG 480 LIFQHAGARD EKGDPIIKDV YSSPLTASGN THDDMLLAKL ESVYTGSGDH GSSMCVFNVE 540 QGLPVLPEWL YFNRINARAR KDVELGPTRV LVRYDHSVFV TVGAIYQKTY PSPNTPPPRY 600 CNCXFEVKLV IXSFGXDFVX LCPASLSGGH VVGNFPPHEA FGIGGTNSVR GYEEGAVGSG 660 RSYAVGSGEI SFPMIGPVGG VIFADYGTDL GSGPTVPGDP AGARHKPGSG YGYGFGIRLD 720 SPLGPLRLEY AFNDQHAKRF HFGVAHAAFL HAVFQYSSYY FRVLRYTLPH QTTXNFHCLK 780 NTNHPYCPLG QVRLQLLAGG RYQPIYSTDV ANTDANDSRF RAHPYPNYFN NGWFNINXVH 840 HFSSTSTPSS XNPYNYHPPN YGDYHNFCSS NNLINNINNT LFTNHHHQSS SPPSPPLREA 900 LPLLSQSPSR NHHHEDMQES AAADDHQSFL SSSRSDDIVD HQEEDDETVT VALHLGLPSR 960 TLSSADLISR LSSPEIPSDK EADVTVASAG FASNRLNKGQ YWIPTPAQIL IGPTQFSCPL 1020 CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRAKP 1080 LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL 1140 KDHIKAFGQG HAAYGIDCFE EEDDVASEIE ENDSSSH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2x8x_X | 2e-27 | 123 | 360 | 1 | 233 | TLR1789 PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.23257 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:18621981}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays an essential role during early stages of plastid development. {ECO:0000269|PubMed:18621981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028955214.1 | 0.0 | outer envelope protein 80, chloroplastic-like isoform X1 | ||||
Swissprot | Q9C5J8 | 0.0 | OEP80_ARATH; Outer envelope protein 80, chloroplastic | ||||
TrEMBL | A0A498K9D8 | 0.0 | A0A498K9D8_MALDO; Uncharacterized protein | ||||
STRING | XP_009374482.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9743 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-117 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000295064 |