PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000294526 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 606aa MW: 66713.6 Da PI: 6.4241 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.7e-30 | 386 | 444 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers++dp+++++tY+g+H+h MDP0000294526 386 ADLWAWRKYGQKPIKGSPHPRNYYRCSTSkGCAARKHVERSTTDPNIFTVTYSGDHTHA 444 699***********************9988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-30 | 371 | 446 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.719 | 380 | 446 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-25 | 382 | 446 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-35 | 385 | 445 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 387 | 443 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MNVDNVAALL LSCTSLPTSN VFDHMPFKRE LAGRALCRDK TQHSIYPPVV GHARAVVHRP 60 FARGGFLTLT HDGFTLRQPI RFXLGRAYVP TVSAFATVSG PVFDIFTKSA PSFEPLLPYS 120 CNQKPRQNTA AAAVLKMADD WDLYAVVRGC KSTAQTTTNT TAAATTAIVP TTPIHTPSDE 180 FADDPFWDLL ISSDELTDPL FSFPDLDDPK DNDLQEQQQS FFPNPTTTNN NKNNNPSTNN 240 TTFXPNNIIP ISPTISDFGG SSGSGQHHLQ QHQQQHHAQL QQQLQQQQNQ QHHLMPDHFT 300 RGIPAPAFRG IYGQQQQQMM QRGYQILQPR QPQNQQGFMR PGSMNPAYPL PRLPXTMPLH 360 TPRSQRRRRT QQNKKVCEVK AEDLTADLWA WRKYGQKPIK GSPHPRNYYR CSTSKGCAAR 420 KHVERSTTDP NIFTVTYSGD HTHARPTHRN SLAGTSRNKL SAASKCQKQP INNDSGSAAV 480 PNPSSPTTGQ PLTVQAEAVA NKDNSDNSLD KENXEFNDDD EEMDETEYGD EDEDDDVVIP 540 DMDMSDEIFL GQKELGSTSS SGSGSSSMVG ASGDNFLDNV QSSLGSSWTD ANCSSAAGAT 600 VGSGCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 374 | 447 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 374 | 447 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008380237.3 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A498KLJ6 | 0.0 | A0A498KLJ6_MALDO; Uncharacterized protein | ||||
STRING | XP_009377624.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009377627.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18883 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 9e-43 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000294526 |