PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000294489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 30334.7 Da PI: 4.8729 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8e-30 | 55 | 112 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC +kk+vers++d +v++itY+ +Hnh+ MDP0000294489 55 DLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLAKKQVERSKTDASVLIITYTCSHNHS 112 89***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-29 | 47 | 113 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 51 | 114 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-34 | 53 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 55 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.469 | 55 | 114 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDETLSPEPD SDVSKELRPE TQSSKRRKVA HEKTVVTVKI GANXGKLKNE GPPFDLWSWR 60 KYGQKPIKGS PYPRGYYRCS TSKGCLAKKQ VERSKTDASV LIITYTCSHN HSGPPDLNVI 120 STTQQEHDQK QEXEQEQEQE QEQEQEXDQK QDQKQEQEQE HRKLEEHFHY IESPIRFSQE 180 EEHIFIAHDT SFEFLLDEKQ EPLSLSYSQM MSFSTPKLSE ENNDFFDELE ELPTFSSFPS 240 FMRRTNNLSF GLERIPSVPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-20 | 55 | 114 | 18 | 79 | Disease resistance protein RRS1 |
5w3x_D | 6e-20 | 55 | 114 | 18 | 79 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30485 | 1e-151 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369035.2 | 0.0 | probable WRKY transcription factor 69 | ||||
Refseq | XP_028956276.1 | 0.0 | probable WRKY transcription factor 69 | ||||
Refseq | XP_028956277.1 | 0.0 | probable WRKY transcription factor 69 | ||||
TrEMBL | A0A498K575 | 0.0 | A0A498K575_MALDO; Uncharacterized protein | ||||
STRING | XP_008369035.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-34 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000294489 |