PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000294359
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 407aa    MW: 44094.8 Da    PI: 7.9036
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000294359genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box253.8e-0858104242
       zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                    + ++C  +++ ++   C+ +   lC +C   +H+       H++vp+
  MDP0000294359  58 RVWMCGVCQQAPAAVTCKADAAALCVSCDADIHSAnplarrHERVPV 104
                    5789*****************************66899999999986 PP
2CCT65.41.6e-22334377144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++
  MDP0000294359 334 REARVLRYREKRKKRKFQKTIRYASRKAYAETRPRIKGRFAKRN 377
                    9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-71461IPR000315B-box-type zinc finger
CDDcd000212.49E-51861No hitNo description
PROSITE profilePS501198.661961IPR000315B-box-type zinc finger
PROSITE profilePS5011910.45257104IPR000315B-box-type zinc finger
PfamPF006431.2E-658104IPR000315B-box-type zinc finger
CDDcd000211.26E-860104No hitNo description
SMARTSM003362.8E-962104IPR000315B-box-type zinc finger
PfamPF062033.0E-17334376IPR010402CCT domain
PROSITE profilePS5101716.608334376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGLQDSWTAA AVGLVDKPCG SCKTLAAALF CRAHLAFLCL ACDSRIHPAN KLTTSHQRVW  60
MCGVCQQAPA AVTCKADAAA LCVSCDADIH SANPLARRHE RVPVEPFYDA AESIVVKSTT  120
GLSSAAAALN YLVPNGDVVF NTKDIENNAA SGWLIPNPNF NSKLHMDIAP DILKSSDDLI  180
FPEMDSLLEF DYPTSVHTIS GSGACNDSVV PVQPDPIPPP SFNMNYNVSG PADHNCFDLD  240
FCRSKLYSSF SYPTQSLSQS VSSSSLDAGV VPDGNSLSDK PYLFGRNASS NGSEPGDISY  300
SFGPKANNKV SEAGVPVSAT PASQPATQLC GLDREARVLR YREKRKKRKF QKTIRYASRK  360
AYAETRPRIK GRFAKRNKTE TDVVDRIYCS RPGTYFPDPQ FGVVPTF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136130.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342378.10.0zinc finger protein CONSTANS-LIKE 5-like
TrEMBLA0A220D3B50.0A0A220D3B5_MALDO; Zinc finger protein CONSTANS-LIKE 5
STRINGXP_008342378.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-98CONSTANS-like 5