PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000293996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 18490 Da PI: 4.7161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 3 | 50 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 ykGVr++ +g+Wv+eIr+p + +r +lg+f+t +eAa a++aa+ + MDP0000293996 3 TYKGVRQRT-WGKWVVEIREP-----HrrARLWLGTFDTSYEAALAYDAAAAAA 50 69****999.**********6.....226*********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.09E-16 | 2 | 38 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-23 | 3 | 50 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-16 | 3 | 54 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 3 | 52 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.9 | 3 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-19 | 3 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-10 | 4 | 15 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-10 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MCTYKGVRQR TWGKWVVEIR EPHRRARLWL GTFDTSYEAA LAYDAAAAAA WKLYGTRTNP 60 ACYAAPVKYI AVPVICNNYA NVKVDQPEXG GMKVEENMSS GVNNEGMDGI FWGKMXESFP 120 VFDDSIWTXA AMSXDLPVVA DQGIFGGGFT DGNCWETLPS SQWCMM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008364770.2 | 2e-91 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A498JDU0 | 7e-71 | A0A498JDU0_MALDO; Uncharacterized protein | ||||
STRING | XP_008364770.1 | 8e-91 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000293996 |