PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000293487
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 378aa    MW: 43350.8 Da    PI: 8.8785
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000293487genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.9e-09199222124
                    --S---SGGGGTS--TTTTT-SS- CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFa 24 
                    ++ ++C +++rtG C yG+rC+++
  MDP0000293487 199 PGVPNCVYYMRTGLCGYGGRCQYN 222
                    5789******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.4102.6E-10969IPR002035von Willebrand factor, type A
SuperFamilySSF533001.78E-81072IPR002035von Willebrand factor, type A
PfamPF048112.3E-51072IPR006896Sec23/Sec24, trunk domain
PROSITE profilePS5010310.089123151IPR000571Zinc finger, CCCH-type
SMARTSM003567.7124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.469198226IPR000571Zinc finger, CCCH-type
SMARTSM003560.11198225IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5200222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0006888Biological ProcessER to Golgi vesicle-mediated transport
GO:0030127Cellular ComponentCOPII vesicle coat
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
VMAQTIRSCF EDLDDVFVPL PDDLLVNLSE SRSVVXSMFQ DNVNVESAFG RALKALLMLM  60
EYQPWGKIVN ISGTRRGVRR CLLSDNQLLR EAMTGGCSIR AIWILNSLDA VVFSRKLTIV  120
FGQGVRQPCT FYLQNGQCKF GFXXKFDHRV QTMRYNLSAS SLVDMPVVQY PVGFLLATLA  180
PSSSSLDLRP RSESYSERPG VPNCVYYMRT GLCGYGGRCQ YNQPRDRSAV VLNFRKFECF  240
VAGRGSCKSY RGLPKESGGN LYVRLTLKYL QDLMQMKNQL PTFVIAFTIR EHFGVNFICT  300
CKLIDKMFVM NYELLFYPRY HLDQSSLLCQ KPLLAKPMVM DVYQEYILVT YRPFDVHIFH  360
VKLFGEFTTP NLQIVEHL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122112e-90fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008374312.11e-124(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-15C3H family protein