PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000293437

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 1295aa MW: 144159 Da PI: 10.1167

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000293437	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	224	260	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W+ E ++++da +++G++ W+++a+ + +R+ +++ MDP0000293437 224 QWSNGELQRFYDAYRKYGKD-WRKVAAAVR-NRSIEMVE 260 7***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	2.3E-6	224	264	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.34E-8	224	268	IPR009057	Homeodomain-like
CDD	cd00167	9.16E-4	225	259	No hit	No description
Pfam	PF06584	3.2E-33	823	923	IPR033471	DIRP domain
SMART	SM01135	3.4E-59	823	924	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1295 aa Download sequence Send to blast
MKGGRRNSSN DDFDGSTRGS RGNNRGLRGN DFDGPRMSNR GSDTRSFNSP RREGFGNGRG 60 RNSFNGDFDR SARGSRSNNK GYRGNDFDGQ RMSNRGDDAH KFKGPRREGF GKQQSGRVNE 120 YGRDKDRGPE EFRNSRRMEW SASDPRWKSG QFTIYWQHIA DQMHLSFTGF NFSIYANFAM 180 APTRKAKGVK RYATVNEASP EKYGGGSNKK KQRKRKLSDK LGLQWSNGEL QRFYDAYRKY 240 GKDWRKVAAA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLKAMMTDHY NVMEGSDSER 300 ESNDDLGFSR KPQKRKLGKD QPSVSKDVLH THPSASLEGC LSLLKRRKLD GDQPRAVGKR 360 TPRVPISYPH KKDDREAYVS PIKRGRKSEG DNDDDIAHVA ALLTEASQRG GSPQVSQTPY 420 GRPVHIKSSS VQSSGRMHPP PGKARANLHR ASVDEDWLEG SSGSGGAETG DDAGDLLEGV 480 GTVEMPSKVN KLYKKREKVK HSGNHQFDDG GEACSGTEGL NVSSRAIDDS EVSNIKGERP 540 SPQGQRKESK KLYFGDESSC LDALQTLADL SLMMPDSKES GSSVQLKDEG ANVDAEDKFS 600 VPEATSTIQF RNKNKIPSAK HRVPYTISGV EGTNSKKSKL GRDXAVDMNT VSESEQQLLS 660 TTKILKRKRK SSIPKISNXD AHMDSDMNES SKTEGCGEEE NKPVTKGKRT NQISTPSKQW 720 KSARSLEGSL NSDHRRTVTD LTGSTAQAPT SSQVNLPTKR TSRRKMYIPR TLHPKEKSCE 780 KKLKNQLITR SNSVPDRALH LKEKISCCLS SHLVHRWCTF EWFYSALDYP WFAKREFEEY 840 LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SEHFLHEERE KLKQYRESVR KHYAELRTGV 900 REGLPTDLAR PLSVGQRVIA LHPKTREVHD GSVLTVDHDK CRVQFDRPXI GDVDCMPLNP 960 LDNMPEALRR QNIAFDKSFL TSKESNKNGN LNFGGPMMFP SSGHLVKATS PVNASIKQGK 1020 EDAIHTTAQP KTASADIGRA QQTAYSQPGM VVAHNQAREA DIRALSELNR ALDKKVSSAL 1080 VNLRQRNTYP ANSLPPWMKQ PANSTIYGGP SSFDXSISQE SGSSVADIVE VSKSKAHMMV 1140 NAAIQAMASR KCGEDAYVTI REALDSIDNQ HFTSDSRLPV NRSQEQVNGS LGHRNQISSG 1200 TSDPNLTSDS SXPKLHDADK NEAQILSELI SACVMAVHMI QTCTERQFPP AVVAQVLDYA 1260 VTSLHPRCPQ NVGVYREIQM CMGRIKTQIL ALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1295 aa Download sequence Send to blast

MKGGRRNSSN DDFDGSTRGS RGNNRGLRGN DFDGPRMSNR GSDTRSFNSP RREGFGNGRG  60
RNSFNGDFDR SARGSRSNNK GYRGNDFDGQ RMSNRGDDAH KFKGPRREGF GKQQSGRVNE  120
YGRDKDRGPE EFRNSRRMEW SASDPRWKSG QFTIYWQHIA DQMHLSFTGF NFSIYANFAM  180
APTRKAKGVK RYATVNEASP EKYGGGSNKK KQRKRKLSDK LGLQWSNGEL QRFYDAYRKY  240
GKDWRKVAAA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLKAMMTDHY NVMEGSDSER  300
ESNDDLGFSR KPQKRKLGKD QPSVSKDVLH THPSASLEGC LSLLKRRKLD GDQPRAVGKR  360
TPRVPISYPH KKDDREAYVS PIKRGRKSEG DNDDDIAHVA ALLTEASQRG GSPQVSQTPY  420
GRPVHIKSSS VQSSGRMHPP PGKARANLHR ASVDEDWLEG SSGSGGAETG DDAGDLLEGV  480
GTVEMPSKVN KLYKKREKVK HSGNHQFDDG GEACSGTEGL NVSSRAIDDS EVSNIKGERP  540
SPQGQRKESK KLYFGDESSC LDALQTLADL SLMMPDSKES GSSVQLKDEG ANVDAEDKFS  600
VPEATSTIQF RNKNKIPSAK HRVPYTISGV EGTNSKKSKL GRDXAVDMNT VSESEQQLLS  660
TTKILKRKRK SSIPKISNXD AHMDSDMNES SKTEGCGEEE NKPVTKGKRT NQISTPSKQW  720
KSARSLEGSL NSDHRRTVTD LTGSTAQAPT SSQVNLPTKR TSRRKMYIPR TLHPKEKSCE  780
KKLKNQLITR SNSVPDRALH LKEKISCCLS SHLVHRWCTF EWFYSALDYP WFAKREFEEY  840
LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SEHFLHEERE KLKQYRESVR KHYAELRTGV  900
REGLPTDLAR PLSVGQRVIA LHPKTREVHD GSVLTVDHDK CRVQFDRPXI GDVDCMPLNP  960
LDNMPEALRR QNIAFDKSFL TSKESNKNGN LNFGGPMMFP SSGHLVKATS PVNASIKQGK  1020
EDAIHTTAQP KTASADIGRA QQTAYSQPGM VVAHNQAREA DIRALSELNR ALDKKVSSAL  1080
VNLRQRNTYP ANSLPPWMKQ PANSTIYGGP SSFDXSISQE SGSSVADIVE VSKSKAHMMV  1140
NAAIQAMASR KCGEDAYVTI REALDSIDNQ HFTSDSRLPV NRSQEQVNGS LGHRNQISSG  1200
TSDPNLTSDS SXPKLHDADK NEAQILSELI SACVMAVHMI QTCTERQFPP AVVAQVLDYA  1260
VTSLHPRCPQ NVGVYREIQM CMGRIKTQIL ALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	316	RKPQKRKL
2	762	783	RRKMYIPRTLHPKEKSCEKKLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8890	0.0	fruit\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434219	2e-72	AM434219.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X191377.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028957277.1	0.0	protein ALWAYS EARLY 2 isoform X5
TrEMBL	A0A498K8X0	0.0	A0A498K8X0_MALDO; Uncharacterized protein
STRING	XP_009376654.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009376687.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	MDP0000293437