PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000292965
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 325aa    MW: 35654.3 Da    PI: 8.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000292965genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19117167256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  MDP0000292965 117 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 167
                    59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.18E-16116176No hitNo description
PROSITE profilePS5103223.327117174IPR001471AP2/ERF domain
SMARTSM003805.4E-36117180IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22117174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-31117175IPR001471AP2/ERF domain
PRINTSPR003674.2E-10118129IPR001471AP2/ERF domain
PfamPF008473.3E-13118167IPR001471AP2/ERF domain
PRINTSPR003674.2E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDIMHENNLA FGFTDAIDIR SSLSNLILTS STNTLDSIFS HCPQTLAAAV TTTTSGSSVS  60
EPLGSSVYLR QRDLLQKFCD EGRAKVNTTA SRSFATNPFQ SSVCSSTTYM APCKKKLYRG  120
VRQRHWGKWV AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAK LNFPNLKDPN  180
NLGFGDWSRL NAVKNSVDAK IQAICQKVKR ERAKKNVKKS SSSVGGDGSF PENGKVVKMV  240
SSPSSSSSPL VDGEGFGHEM VSLTPTPSVS EDGVWRIENP PPSVSTEFQM GMAELGMGEK  300
SEFEGCSLAK MPSFDPELIW EVLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20116174160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20114174263ATERF1
3gcc_A3e-20114174263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.156561e-159fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341502.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1P8VHU30.0A0A1P8VHU3_9ROSA; DREB6.7
STRINGXP_008341502.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-47ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]