PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000292965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 325aa MW: 35654.3 Da PI: 8.5611 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 117 | 167 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge MDP0000292965 117 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 167 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.18E-16 | 116 | 176 | No hit | No description |
PROSITE profile | PS51032 | 23.327 | 117 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-36 | 117 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 117 | 174 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 117 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 118 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDIMHENNLA FGFTDAIDIR SSLSNLILTS STNTLDSIFS HCPQTLAAAV TTTTSGSSVS 60 EPLGSSVYLR QRDLLQKFCD EGRAKVNTTA SRSFATNPFQ SSVCSSTTYM APCKKKLYRG 120 VRQRHWGKWV AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAK LNFPNLKDPN 180 NLGFGDWSRL NAVKNSVDAK IQAICQKVKR ERAKKNVKKS SSSVGGDGSF PENGKVVKMV 240 SSPSSSSSPL VDGEGFGHEM VSLTPTPSVS EDGVWRIENP PPSVSTEFQM GMAELGMGEK 300 SEFEGCSLAK MPSFDPELIW EVLAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 116 | 174 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-20 | 114 | 174 | 2 | 63 | ATERF1 |
3gcc_A | 3e-20 | 114 | 174 | 2 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15656 | 1e-159 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008341502.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 1e-65 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A1P8VHU3 | 0.0 | A0A1P8VHU3_9ROSA; DREB6.7 | ||||
STRING | XP_008341502.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 2e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000292965 |
Publications ? help Back to Top | |||
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