PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291838
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 356aa    MW: 40353 Da    PI: 4.4531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291838genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.23.9e-37171433127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                    pGfrFhPtde lv +yLk+k++g++ ++   i+e+d+ k+ePw++p    + +e+ew+fF++ + k   ++r+ rat++g+ k+tg ++e+ ++ +
  MDP0000291838  17 PGFRFHPTDELLVRYYLKNKIQGTDSHFRYLIPEIDVSKYEPWEIPaFFPEVHENEWFFFTRPKYKDIDKTRRDRATDQGFYKSTGDEREIRAEeS 112
                    9************************999888***************545556889*************************************9856 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                    ++++g k+ L+f++gr  k++ktdWv+he++
  MDP0000291838 113 ESVIGKKRFLTFHEGRGLKAKKTDWVIHEFK 143
                    6679*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3714154IPR003441NAC domain
PROSITE profilePS5100538.93315177IPR003441NAC domain
PfamPF023659.8E-2017143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTTEEGDAVH VNVIPLPGFR FHPTDELLVR YYLKNKIQGT DSHFRYLIPE IDVSKYEPWE  60
IPAFFPEVHE NEWFFFTRPK YKDIDKTRRD RATDQGFYKS TGDEREIRAE ESESVIGKKR  120
FLTFHEGRGL KAKKTDWVIH EFKETEVGSF VLCLLKNRSP SYKKPKGDPI CGKLADSGAN  180
SEDNQAAVSD VIPEPVEHLG YKGRGDVNSS ESPDGSRLID SNNILSFDDG DDETGDWKFP  240
DLDDPTAFAR FLELRAEMEE ILNSPPQTPH QTPQDYLSST FLSSGNIQLG AVLQANGTSD  300
DCNTIQSPFG DNNYSYTDKN XISTXDEGEP HSFTVSDFEN KAADDMSQEV RINMLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2311644171NO APICAL MERISTEM PROTEIN
1ut4_B1e-2311644171NO APICAL MERISTEM PROTEIN
1ut7_A1e-2311644171NO APICAL MERISTEM PROTEIN
1ut7_B1e-2311644171NO APICAL MERISTEM PROTEIN
4dul_A1e-2311644171NAC domain-containing protein 19
4dul_B1e-2311644171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955780.10.0transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A498KPH00.0A0A498KPH0_MALDO; Uncharacterized protein
STRINGXP_008360142.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-33NAC transcription factor-like 9