PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000291622

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 330aa MW: 38003.1 Da PI: 10.3993

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000291622	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.5	9.6e-27	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl MDP0000291622 203 ASIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 252 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.588	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-22	205	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDSSDCDPHL LRSLLVFKNT INQELIRSLH VYGLDEGKRN EVEREFVFRE NGLYVELSAE 60 PVLRLMKFPA SQVLQGHVNG CWVCILAFHE NSPPDFTCIP SVLSVSRNPK LKTIPRLSND 120 LQMIFKLSCK TXDKKSLQRS REETSQGSNH SHHKSRRWPI LDLDLNSLPS PVTMSESSED 180 QESGRSSPGI XEKKRRAPSG RIASIALSDL AKYFDLPIVE ASRNLNVGLT VLKKKCREFG 240 IPRWPHRKIK SLDSLIRDLQ EETEVQQKEN KAAALAVLKR QRMLERERES IERRPFLEMK 300 TETKRFRQDV FKRRHRARAL RSQGLSTSAN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.1476	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017186748.2	0.0	protein RKD5
Swissprot	O81791	7e-88	RKD5_ARATH; Protein RKD5
TrEMBL	A0A498HTZ8	0.0	A0A498HTZ8_MALDO; Uncharacterized protein
STRING	XP_008367933.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-84	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	MDP0000291622

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]