PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000291579

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 530aa MW: 61006.9 Da PI: 9.5775

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000291579	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.3	3.2e-114	158	527	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL++cA+av++ d++ a++lL+++++++sp gd++qRla+yf+ +L+arla+ ++ +y+ l ++ts ++e l+ +++ sP+ +s++ MDP0000291579 158 LRTLLTQCAQAVANYDQRTASELLQKIRHHSSPCGDANQRLAHYFADGLEARLAGATTPTYSFLVGTQTS---TAEILKGYQVXISSSPFKLMSNF 250 6789**********************************************************999999...89***************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 +aN++I++ e+++r+HiiDf+is+G+QWp+++q L++R++gpp+lRiT+++ p++g +e++eet++rL+k+Ae+++vpfe nv +a+++e+++ MDP0000291579 251 MANRTIMKLSENATRLHIIDFGISYGFQWPCFIQHLSERTGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIK 345 ****************************************************9************************9.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +e+L++++ E ++Vn++ +l++++de+v +s+rd vLkl+k+++P+v+++ + +n++ F++rf eal++ysa+fd +ea++pre+e r+ E MDP0000291579 346 FEDLKIDRSELTVVNCMCRLKHIPDETVMASSPRDIVLKLIKKINPDVFIHGVVNGTYNAPFFATRFREALYHYSAFFDIFEATVPREDEMRQLFE 441 ******************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ gr+ivnvvaceg er+er et+++W+ r +aGFk++pl++ k +k +l+ +++d +r++e+ +++++ W++r+ +++S W MDP0000291579 442 KAIHGRDIVNVVACEGLERVERPETYKQWQVRXVRAGFKQLPLDQALLKRVKXMLKSYHDD-FRIDEDGNWMLQSWRGRTXLALSIW 527 *******************************************************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.611	132	509	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-111	158	527	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MAPLLLLRQN GVLILQKPPI SNLLLLSLNR ITFWFRICFL SRKVLSISEE RHHLMHPGPD 60 LWPPGTRTLV RRPENDGYNS TNILKGKKNH QREDVDYPEE GRSSKLPVAF ADDSEPPQEM 120 FDEVLLCHGH HRLGNKQSKG AKTTRSKKQN NNTXIVDLRT LLTQCAQAVA NYDQRTASEL 180 LQKIRHHSSP CGDANQRLAH YFADGLEARL AGATTPTYSF LVGTQTSTAE ILKGYQVXIS 240 SSPFKLMSNF MANRTIMKLS ENATRLHIID FGISYGFQWP CFIQHLSERT GGPPKLRITA 300 IELPQPGFRP TERVEETARR LKKYAERFNV PFECNVIAQK WETIKFEDLK IDRSELTVVN 360 CMCRLKHIPD ETVMASSPRD IVLKLIKKIN PDVFIHGVVN GTYNAPFFAT RFREALYHYS 420 AFFDIFEATV PREDEMRQLF EKAIHGRDIV NVVACEGLER VERPETYKQW QVRXVRAGFK 480 QLPLDQALLK RVKXMLKSYH DDFRIDEDGN WMLQSWRGRT XLALSIWVPA

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MAPLLLLRQN GVLILQKPPI SNLLLLSLNR ITFWFRICFL SRKVLSISEE RHHLMHPGPD  60
LWPPGTRTLV RRPENDGYNS TNILKGKKNH QREDVDYPEE GRSSKLPVAF ADDSEPPQEM  120
FDEVLLCHGH HRLGNKQSKG AKTTRSKKQN NNTXIVDLRT LLTQCAQAVA NYDQRTASEL  180
LQKIRHHSSP CGDANQRLAH YFADGLEARL AGATTPTYSF LVGTQTSTAE ILKGYQVXIS  240
SSPFKLMSNF MANRTIMKLS ENATRLHIID FGISYGFQWP CFIQHLSERT GGPPKLRITA  300
IELPQPGFRP TERVEETARR LKKYAERFNV PFECNVIAQK WETIKFEDLK IDRSELTVVN  360
CMCRLKHIPD ETVMASSPRD IVLKLIKKIN PDVFIHGVVN GTYNAPFFAT RFREALYHYS  420
AFFDIFEATV PREDEMRQLF EKAIHGRDIV NVVACEGLER VERPETYKQW QVRXVRAGFK  480
QLPLDQALLK RVKXMLKSYH DDFRIDEDGN WMLQSWRGRT XLALSIWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-44	140	529	1	380	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24802	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028945141.1	0.0	uncharacterized protein LOC103447524
Swissprot	Q9XE58	1e-170	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M5W7W5	0.0	M5W7W5_PRUPE; Uncharacterized protein
STRING	XP_008359011.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-173	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	MDP0000291579

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]