PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291152
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 458aa    MW: 52474.5 Da    PI: 6.4623
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291152genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind74.81.5e-2363129267
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT.EEE--- CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg.Fkkvkd 67 
                    Fl+k+y++++d++ ++++sws++  sfvv+d+  f  ++LpkyFkh+n++SFvRQLn+Yg F++ + 
  MDP0000291152  63 FLNKTYDMVDDPDSNQVVSWSRERGSFVVWDPYIFVMSLLPKYFKHNNLSSFVRQLNTYGpFEEDQF 129
                    9********************999***********************************95655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-2559154IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-2160147IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-2460147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-2063148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-146386IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-14101113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-14114126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:2.130.10.106.2E-21223321IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.45E-20224322IPR017986WD40-repeat-containing domain
PROSITE profilePS5029414.819224319IPR017986WD40-repeat-containing domain
SMARTSM003201.9237270IPR001680WD40 repeat
PfamPF004000.02239267IPR001680WD40 repeat
SMARTSM003201.4E-4281320IPR001680WD40 repeat
PfamPF004004.6E-4287319IPR001680WD40 repeat
PROSITE profilePS5008212.681288319IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAENGHKLQQ QQLEESIKLM TTTILPFILH FNNNLLKEEY PGSSSSQSGP NFDPMVMMIP  60
PPFLNKTYDM VDDPDSNQVV SWSRERGSFV VWDPYIFVMS LLPKYFKHNN LSSFVRQLNT  120
YGPFEEDQFQ LSGSSNAGRE LGFSSPNLDH HSAEFRFLDL GGAGPVEFDS DEWMDRIICG  180
EQSWFRSLWH RFVSTPLPES TKQSLFSAVK SQLSHILRDP KPIASDNQTI RIWNWQSHTC  240
ISVLTGHNDY VMCASFHPKE DLVVSASLYQ TMNTDLFGDV DVVVKYVLER HDRGVNWVSF  300
HPNLPLIVSG ADDRQVKLWW INGIIITTFL VNVYFPESDN SDSQILVMLC EELPCGLPQC  360
RKPEMKLIIL HSHGNTADMG QMYELSNELS LHLRVNLVEY DYSGYGQSLL SAFVAHHLKM  420
RESKSKAENK RSQQQPGSGK RNKSRKEKVK AKEKEKEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a1u_C7e-40224322111235COATOMER SUBUNIT ALPHA
5a1v_C7e-40224322111235COATOMER SUBUNIT ALPHA
5a1v_K7e-40224322111235COATOMER SUBUNIT ALPHA
5a1v_T7e-40224322111235COATOMER SUBUNIT ALPHA
5a1w_C7e-40224322111235COATOMER SUBUNIT ALPHA
5a1x_C7e-40224322111235COATOMER SUBUNIT ALPHA
5a1x_K7e-40224322111235COATOMER SUBUNIT ALPHA
5a1y_C7e-40224322111235COATOMER SUBUNIT ALPHA
5a1y_K7e-40224322111235COATOMER SUBUNIT ALPHA
5nzr_A7e-40224322111235Coatomer subunit alpha
5nzs_A7e-40224322111235Coatomer subunit alpha
5nzt_A7e-40224322111235Coatomer subunit alpha
5nzu_A7e-40224322111235Coatomer subunit alpha
5nzv_A7e-40224322111235Coatomer subunit alpha
5nzv_H7e-40224322111235Coatomer subunit alpha
6pbg_A3e-41224322112236Coatomer subunit alpha
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.92869e-66bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498HND21e-170A0A498HND2_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-25heat shock transcription factor A6B