PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291070
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 593aa    MW: 67032.8 Da    PI: 8.4444
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291070genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-183078149
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   kr+e+k +r+vtfskR+ g++ KA ELSv ++ae   i++ss+gk++ +
  MDP0000291070 30 KRVEDKNKRHVTFSKRKRGLFNKAAELSVFTGAETVAIVVSSNGKVFCF 78
                   799******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-262281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.1512282IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-232396IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-152444IPR002100Transcription factor, MADS-box
PfamPF003192.5E-173178IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-154459IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-155980IPR002100Transcription factor, MADS-box
SuperFamilySSF497852.13E-20434589IPR008979Galactose-binding domain-like
PfamPF085472.3E-24437533IPR013857NADH:ubiquinone oxidoreductase intermediate-associated protein 30
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MVKSPDNKIT DIGTTNGKKE SKGRRRVEIK RVEDKNKRHV TFSKRKRGLF NKAAELSVFT  60
GAETVAIVVS SNGKVFCFGS PSPDTVIKRY LSDNTFLLPA GQPDNHLQNN NIHHSSNKKQ  120
IKDYVEASTR LKEXKXLKGG KKNYSNNNGG DGGDGGDGGC SYGWWERPIG MMTSLEELEE  180
YRDALYKLKH NVEVRTNQMI RETNPSTHFS PLLFMDDIWN SPELSHDCSA EDXDIXHLFF  240
NCNFEKLVWN YQSIPNSIRL NQSLHFNDWH NDLSVKVDAG LCDLSKVLLI CWQIWNEXNL  300
VVFQNKVPNX TWIVKXAINF GRDFIVANSV SPMSHNALQD GLWLAKAKGL SRIVVIEAIR  360
GVYNRPWRLK TILEGIXWLA ESXLEICWKH VFRKANFLAD AITXLYGNRT LKSTSWLPIT  420
LTWNVEDLVP PTERFIFNFN SKDELKKWHL YSDSEYGGLS SASLEVPDNE NGPTGIFSGN  480
LSLDFIEGAK LKINRSGFCG MRSKKFDGYI DLDPYDTIAL KVKGDGRCYI STIPLALYLP  540
TWRGNVIDAE MEMNPSRVVG MSLSVNAEGG LPGARTGAGD FKLEIDWIKA LRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-179105199PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-179105199PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.236410.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF984733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-18AGAMOUS-like 62