PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000290585
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 338aa    MW: 37216.9 Da    PI: 9.2169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000290585genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18206255154
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                    + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta eAa a+++a+++++
  MDP0000290585 206 CNYRGVRQRT-WGKWVAEIRTP---N-RgSRLWLGTFPTAIEAALAYDEAARAMY 255
                    56*****999.**********8...3.35**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-13206255IPR001471AP2/ERF domain
CDDcd000181.65E-29206265No hitNo description
SuperFamilySSF541717.19E-20207264IPR016177DNA-binding domain
PROSITE profilePS5103221.377207264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-31207265IPR001471AP2/ERF domain
SMARTSM003801.2E-33207270IPR001471AP2/ERF domain
PRINTSPR003671.1E-9208219IPR001471AP2/ERF domain
PRINTSPR003671.1E-9230246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MXSKMRGRDC YPQITVTRSE VTGNSLEAHG FAXKMGVLPP RRSRTXLIMG EARXRMRGID  60
MRVSTERDEE ERGLGVGGGT EREKRVVSLN LKLSFHGALT IFIFQALLPP LQIPASILKG  120
GPGTKTRSLI IIFPVQYNLN CMPKLVKTDX RRDGPNPVAE TLAKWKEYND HLDSCNDEGG  180
PFRRVPAKGS KKGCMKGKGG PENSRCNYRG VRQRTWGKWV AEIRTPNRGS RLWLGTFPTA  240
IEAALAYDEA ARAMYXSAAR LNFPNISIST LSKDSSSTKT LSXLPLLASS AGSESSARSD  300
HSGDCAAQDE DQXNGLSSNV ENDDTTNVDQ TNEDRDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16207264260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.44645e-42fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362249.21e-108putative dehydration-responsive element-binding protein 2H
TrEMBLA0A498HAQ30.0A0A498HAQ3_MALDO; Uncharacterized protein
STRINGXP_008362249.11e-139(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-31DRE-binding protein 2A