PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000290374
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 455aa    MW: 49948.3 Da    PI: 7.7464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000290374genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29205264159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  MDP0000290374 205 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApACPVRKQVQRCYEDMSILITTYEGTHNHP 264
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31190266IPR003657WRKY domain
SuperFamilySSF1182909.81E-27197266IPR003657WRKY domain
PROSITE profilePS5081128.185200266IPR003657WRKY domain
SMARTSM007747.6E-35205265IPR003657WRKY domain
PfamPF031061.1E-25206264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MRMPNSNSRS SAEKKVDQSV GYQEVHRRVL RKGSELDDAK AEMGEVREEN ARLKMTLNHI  60
QKDYQSLQLR FFDILRQEAS KNAVNVAGDR IIEEPEQLLS LCLGRSPREP TSDRETTTSS  120
NFTKLVQVDD GEDNLKANLT LGLGSNETSL EEPNKDRAEA GSGDATSPLS KTPKTMRNED  180
GEPPTQVNAK RARVSVRTRC DTPTMNDGCQ WRKYGQKISK GNPCPRAYYR CTVAPACPVR  240
KQVQRCYEDM SILITTYEGT HNHPLPFTAT YLASTTSAAA SMLLSGSCTS HPGFSTTSTL  300
LNGSEFSAFD NTRTQLYMPK SSQPLLPTIT LDLTASPPSS STFPSSLSFC SPSDSNIFPT  360
SWDNGYLKHG LHQFDKAQVG SFNLGKPSQE YFHQNYAEXI HQASSQVSLT ESLTKAITSN  420
PNFKSVIALA LSSMVGSGGG ATHRNQGESG ERINT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-21196266877Probable WRKY transcription factor 4
2ayd_A7e-21192266174WRKY transcription factor 1
2lex_A7e-21196266877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341547.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 72
SwissprotQ9LXG87e-97WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A498HIZ30.0A0A498HIZ3_MALDO; Uncharacterized protein
STRINGXP_008341547.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-92WRKY DNA-binding protein 72