PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000289784

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 699aa MW: 78556.7 Da PI: 6.2441

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000289784	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.5	1.9e-109	326	695	2	372
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL+ecAeav+ d+++a++lL++++++ sp+ d++qRla+yf+ +L+arla+ + y l + + + ++e l+a+++++ ++P+ k+ h+ MDP0000289784 326 XKLLTECAEAVAXYDQQAANELLKQIRQHTSPYXDSTQRLAHYFADGLEARLAGARNPSYCPLIMMHIP---EAEILKAYQVYVTACPFKKMVHFF 418 689*************************************************887777777777776...89****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN++I++ +e+++r+HiiDf+is+GlQWp+L+q+L+++++gpp+l iT ++ p++g +e +eetg+rL+k++e+ +vpfe+nv +ak++e++ l MDP0000289784 419 ANRTIMKTAEKATRLHIIDFGISYGLQWPCLIQSLSEKTGGPPKLCITLIEVPQPGxrPAEIIEETGRRLTKYCERYNVPFEYNV-IAKKWETIXL 513 ***************************************************999999*******************9.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e++r++++E+++Vn++++l++++de+v +++rd+vL+l+k+++P+++ + + +n++ F++rf +al ++ ++fd++ea++pre+e+r+ Er MDP0000289784 514 EDFRIDRNEVTVVNCMHRLKQIPDETVMANNPRDAVLNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQALFHFYTFFDMYEATVPREDEQRMLFER 609 ******************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +++gr+i nvvaceg+er+er et+++W++r + GFk++pl+ k++k++ + ++ + +e++ +++++gWk+r +++++a MDP0000289784 610 AIFGRDIINVVACEGQERVERPETYKQWQARYARIGFKQLPLDRALLKKVKTMSKVMGyHSDFLIEDDGQWMLQGWKGRIVLALTA 695 *************************************************999988888****************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.209	299	676	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-107	326	695	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MDTLYVERFS APTEGFEFGN GSNSVCSDEN LADGFKENHE STNPNSLPSN LDHPSVSXTS 60 LXAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACKLQ QSLALQIAEK SFHDALNSEN 120 PPLLNQPTFS VYQSFENSDV GFHSSDGSIA SFYSSNGYIS ANSGCGWDVS QLCHVQSSLF 180 EPISDTLNVX DSFSVEEGIK FVPKKSCEII DPKXDQLVPS GSDQWXPGPC XLIGNLASKN 240 GYXSTNGSKG KKNHXREDGY DTEEGRRNKQ SAAALQSVNH EPDSCSHDEP SQSKGNXMLQ 300 HKKQSKGSKA SXGKKQNSNG KVVXLXKLLT ECAEAVAXYD QQAANELLKQ IRQHTSPYXD 360 STQRLAHYFA DGLEARLAGA RNPSYCPLIM MHIPEAEILK AYQVYVTACP FKKMVHFFAN 420 RTIMKTAEKA TRLHIIDFGI SYGLQWPCLI QSLSEKTGGP PKLCITLIEV PQPGXRPAEI 480 IEETGRRLTK YCERYNVPFE YNVIAKKWET IXLEDFRIDR NEVTVVNCMH RLKQIPDETV 540 MANNPRDAVL NLIKRINPDL FMHGVVNGTY NAPAFVTRFK QALFHFYTFF DMYEATVPRE 600 DEQRMLFERA IFGRDIINVV ACEGQERVER PETYKQWQAR YARIGFKQLP LDRALLKKVK 660 TMSKVMGYHS DFLIEDDGQW MLQGWKGRIV LALTALKPA

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MDTLYVERFS APTEGFEFGN GSNSVCSDEN LADGFKENHE STNPNSLPSN LDHPSVSXTS  60
LXAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACKLQ QSLALQIAEK SFHDALNSEN  120
PPLLNQPTFS VYQSFENSDV GFHSSDGSIA SFYSSNGYIS ANSGCGWDVS QLCHVQSSLF  180
EPISDTLNVX DSFSVEEGIK FVPKKSCEII DPKXDQLVPS GSDQWXPGPC XLIGNLASKN  240
GYXSTNGSKG KKNHXREDGY DTEEGRRNKQ SAAALQSVNH EPDSCSHDEP SQSKGNXMLQ  300
HKKQSKGSKA SXGKKQNSNG KVVXLXKLLT ECAEAVAXYD QQAANELLKQ IRQHTSPYXD  360
STQRLAHYFA DGLEARLAGA RNPSYCPLIM MHIPEAEILK AYQVYVTACP FKKMVHFFAN  420
RTIMKTAEKA TRLHIIDFGI SYGLQWPCLI QSLSEKTGGP PKLCITLIEV PQPGXRPAEI  480
IEETGRRLTK YCERYNVPFE YNVIAKKWET IXLEDFRIDR NEVTVVNCMH RLKQIPDETV  540
MANNPRDAVL NLIKRINPDL FMHGVVNGTY NAPAFVTRFK QALFHFYTFF DMYEATVPRE  600
DEQRMLFERA IFGRDIINVV ACEGQERVER PETYKQWQAR YARIGFKQLP LDRALLKKVK  660
TMSKVMGYHS DFLIEDDGQW MLQGWKGRIV LALTALKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-45	331	698	25	380	Protein SCARECROW
5b3h_A	3e-45	331	698	24	379	Protein SCARECROW
5b3h_D	3e-45	331	698	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028945141.1	0.0	uncharacterized protein LOC103447524
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
STRING	XP_008384945.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-160	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	MDP0000289784