PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289671
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 321aa    MW: 36059.9 Da    PI: 5.9455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
    MDP0000289671 13 KGLWSPEEDEKLLNHINTFGHGSWSSVPKLAGLXRCGKSCRLRWINYL 60
                     678*******************************************97 PP
2Myb_DNA-binding47.73.6e-1566109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E+  +vd+++ lG++ W+ Ia++++ gRt++++k++w++
    MDP0000289671  66 RGPFSEIEERTIVDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-25563IPR009057Homeodomain-like
PROSITE profilePS5129417.021860IPR017930Myb domain
SuperFamilySSF466891.46E-2910107IPR009057Homeodomain-like
SMARTSM007172.3E-131262IPR001005SANT/Myb domain
PfamPF002494.0E-151360IPR001005SANT/Myb domain
CDDcd001672.58E-111660No hitNo description
PROSITE profilePS5129424.41561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2464116IPR009057Homeodomain-like
SMARTSM007171.5E-1465113IPR001005SANT/Myb domain
PfamPF002491.4E-1366109IPR001005SANT/Myb domain
CDDcd001679.11E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGHNCCSKQK IKKGLWSPEE DEKLLNHINT FGHGSWSSVP KLAGLXRCGK SCRLRWINYL  60
RPDLKRGPFS EIEERTIVDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGF  120
DPNTHNLLPS FKANNNNNNN IXACNMFSPS SFFSVNSSHV SADTSIDILE APYLTLPSTS  180
SPHTNHVDIS LHECSTISTY EFQVQEQINP NVLTESMGIN SVPTISTSHL YPISELENIV  240
NESFQPITKS TNPKDILQSQ QEEACEVVEN EKPSVLNGAQ TNIDASFGSS NFDLDFMECT  300
ELPCGMYNYQ LSPMDQLTWN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131157108B-MYB
1h8a_C4e-291111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017187718.20.0transcription factor MYB86-like
TrEMBLA0A498JUP90.0A0A498JUP9_MALDO; Uncharacterized protein
STRINGXP_008372130.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-80myb domain protein 67