PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000289554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 641aa MW: 70667.2 Da PI: 9.6731 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 367.9 | 1.4e-112 | 279 | 638 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lLl+cAe+v+ ++l a+ lL ++ el+sp g++ +R+ ayf+ AL++r+++s+ ++y+ l++++ + +s++ ++al+ ++ +sP++kfsh+t MDP0000289554 279 GLLLQCAECVAMDKLDDASDLLPEIAELSSPFGSSPERIGAYFAHALQTRVVSSCLGTYSPLTTKTLTLAQSQRIFNALQSYNSISPLVKFSHFTS 374 58******************************************************************99************************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 NqaI +a++ge+++H+iD+di+qGlQWp L++ LasR+++ s+RiTg+gs s+e le+tg+rLa+fA++lg+pfef++l k + el++L MDP0000289554 375 NQAIFQALDGEDHIHVIDLDIMQGLQWPGLFHILASRTKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFQPLEGKIGSITELNQL 466 ***************************************************....9**************************988888999***** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +kp Ea+++++++ h l+d ++s L+l+ sl+Pk+++++eq+++h s+sFl rf+eal+yysalfd+l +l+++s er++vE++l+ MDP0000289554 467 GIKPSEATVIHWMH--HCLYDVTGSDLA----ALRLLGSLRPKLITIAEQDLSH-SGSFLGRFVEALHYYSALFDALGDGLGADSLERHMVEQQLF 555 *************9..888877777777....9*********************.899************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g ei+n++a g +r+ + + le+W + l+++GF+ v+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+ MDP0000289554 556 GCEIRNILAVGGPKRTGEVK-LERWGDELKRVGFRGVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 638 **************998887.**************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.30.30 | 1.3E-15 | 3 | 115 | IPR014722 | Ribosomal protein L2 domain 2 |
SuperFamily | SSF50104 | 6.02E-15 | 3 | 133 | IPR008991 | Translation protein SH3-like domain |
CDD | cd06090 | 4.54E-48 | 6 | 88 | No hit | No description |
Pfam | PF01777 | 4.6E-30 | 52 | 133 | IPR001141 | Ribosomal protein L27e |
ProDom | PD009396 | 3.0E-23 | 60 | 133 | IPR001141 | Ribosomal protein L27e |
PROSITE profile | PS50985 | 54.79 | 251 | 618 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-110 | 279 | 638 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MVKFLKPNKA VINLQGRYAG RKAVIVRAFD EGTRDRPYGH CLVAGIKKYP SKVIRKDSAK 60 KTAKKSRVKA FVKLVNYQHL MPTRYTLDVD LKDVVNVESL QTKDKKVTAL KEVKKRFEER 120 FKTGKNRWFF TKLSTKSALC VKNLMLSAEL SVRAFGCLSR FSLSLSARKL PSFLYSPHTS 180 SFLLPPSPLP VMLQSLIPQS PIAAANPNIN NPTSSSSSSM KTKRVDRDLA GSGSGDSDAE 240 DPSFTKRLSS GRNFREQTAD DRDTETVEEG ESAGLRLLGL LLQCAECVAM DKLDDASDLL 300 PEIAELSSPF GSSPERIGAY FAHALQTRVV SSCLGTYSPL TTKTLTLAQS QRIFNALQSY 360 NSISPLVKFS HFTSNQAIFQ ALDGEDHIHV IDLDIMQGLQ WPGLFHILAS RTKKIRSMRI 420 TGFGSSSELL ESTGRRLADF ASSLGLPFEF QPLEGKIGSI TELNQLGIKP SEATVIHWMH 480 HCLYDVTGSD LAALRLLGSL RPKLITIAEQ DLSHSGSFLG RFVEALHYYS ALFDALGDGL 540 GADSLERHMV EQQLFGCEIR NILAVGGPKR TGEVKLERWG DELKRVGFRG VSLGGNPAAQ 600 ASLLLGMFPW KGYTLVEENG CLKLGWKDLS LLTASAWQPL D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-157 | 283 | 639 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-157 | 283 | 639 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-157 | 283 | 639 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 115 | KKVTALKEVKKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16709 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342299.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 0.0 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A498HEB9 | 0.0 | A0A498HEB9_MALDO; Uncharacterized protein | ||||
STRING | XP_008342299.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008362328.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2068 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000289554 |
Publications ? help Back to Top | |||
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